An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.

Publication

Genetic and Proteomic Interrogation of Lower Confidence Candidate Genes Reveals Signaling Networks in Î²-Catenin-Active Cancers.

Rosenbluh J, Mercer J, Shrestha Y, Oliver R, Tamayo P, Doench JG, Tirosh I, Piccioni F, Hartenian E, Horn H, Fagbami L, Root DE, Jaffe J, Lage K, Boehm JS, Hahn WC

Genome-scale expression studies and comprehensive loss-of-function genetic screens have focused almost exclusively on the highest confidence candidate genes. Here, we describe a strategy for characterizing the lower confidence candidates identified by such approaches. We interrogated 177 genes that we classified as essential for the proliferation of cancer cells exhibiting constitutive Î²-catenin activity and integrated data for each of the candidates, ... [more]

Cell Syst Dec. 28, 2015; 3(3);302-316.e4 [Pubmed: 27684187]

Throughput

High Throughput

Additional Notes

High-credibility protein interactions were identified using draft-PPI and a method for protein interaction credibility scoring (ICS).

Related interactions

Interaction	Experimental Evidence Code	Dataset	Throughput	Score	Curated By	Notes
KRAS CAP1	Negative Genetic Negative Genetic Mutations/deletions in separate genes, each of which alone causes a minimal phenotype, but when combined in the same cell results in a more severe fitness defect or lethality under a given condition. This term is reserved for high or low throughput studies with scores.	Vichas A (2021)	High	-	BioGRID	3343985

Curated By

BioGRID

Interaction Summary

KRAS

Gene Ontology Biological Process

Gene Ontology Molecular Function

protein binding [IPI]protein complex binding [IDA]

Gene Ontology Cellular Component

CAP1