BAIT
NAM7
IFS2, MOF4, SUP113, UPF1, ATP-dependent RNA helicase NAM7, L000002429, S000029550, L000002232, YMR080C
ATP-dependent RNA helicase of the SFI superfamily; involved in nonsense mediated mRNA decay; required for efficient translation termination at nonsense codons and targeting of NMD substrates to P-bodies; binds to the small ribosomal subunit via an interaction with Rps26; forms cytoplasmic foci upon DNA replication stress
GO Process (9)
GO Function (5)
GO Component (3)
Gene Ontology Biological Process
- DNA recombination [IMP]
- chromatin silencing at silent mating-type cassette [IGI]
- intracellular mRNA localization [IMP]
- nuclear-transcribed mRNA catabolic process [IMP]
- nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay [IGI, IMP]
- nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [TAS]
- protein ubiquitination [IDA, IMP, IPI]
- regulation of translational termination [TAS]
- translational frameshifting [IMP]
Gene Ontology Molecular Function
Saccharomyces cerevisiae (S288c)
PREY
CRC1
S000007462, YOR100C
Mitochondrial inner membrane carnitine transporter; required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation
GO Process (1)
GO Function (1)
GO Component (3)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Saccharomyces cerevisiae (S288c)
Affinity Capture-RNA
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and associated RNA species identified by Northern blot, RT-PCR, affinity labeling, sequencing, or microarray analysis.
Publication
Association of yeast Upf1p with direct substrates of the NMD pathway.
Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism that detects and degrades transcripts containing premature translation termination codons. Gene expression profiling experiments have shown that inactivation of the NMD pathway leads to the accumulation of both aberrant, nonsense-containing mRNAs, and many apparently wild-type transcripts. Such increases in transcript steady-state levels could arise from direct changes in the respective mRNA half-lives, ... [more]
Proc. Natl. Acad. Sci. U.S.A. Dec. 26, 2007; 104(52);20872-7 [Pubmed: 18087042]
Throughput
- High Throughput
Additional Notes
- Transcript signal intensity, between the Upf1p-TAP and mock samples, showed a relative change of at least 2-fold. This change was reproducible in at least three of four replicate experiments and demonstrated a statistically significant P value.
Curated By
- BioGRID