TNFRSF10B
Gene Ontology Biological Process
- activation of NF-kappaB-inducing kinase activity [NAS]
- activation of cysteine-type endopeptidase activity involved in apoptotic process [TAS]
- apoptotic process [NAS, TAS]
- apoptotic signaling pathway [TAS]
- cell surface receptor signaling pathway [TAS]
- cellular response to mechanical stimulus [IEP]
- extrinsic apoptotic signaling pathway via death domain receptors [NAS]
- intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress [IMP]
- positive regulation of I-kappaB kinase/NF-kappaB signaling [IEP]
- regulation of apoptotic process [NAS]
- regulation of extrinsic apoptotic signaling pathway in absence of ligand [TAS]
- response to endoplasmic reticulum stress [IDA]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
VAMP3
Gene Ontology Biological Process
- exocytosis [TAS]
- membrane fusion [TAS]
- mucus secretion [IMP]
- negative regulation of secretion by cell [IDA]
- neurotransmitter secretion [IBA]
- positive regulation of immunoglobulin secretion [IMP]
- positive regulation of receptor recycling [ISS]
- protein complex assembly [TAS]
- regulation of histamine secretion by mast cell [IMP]
- retrograde transport, endosome to Golgi [IDA]
- substrate adhesion-dependent cell spreading [ISS]
- vesicle docking involved in exocytosis [TAS]
- vesicle fusion [IBA]
- vesicle-mediated transport [ISS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
The BioPlex Network: A Systematic Exploration of the Human Interactome.
Protein interactions form a network whose structure drives cellular function and whose organization informs biological inquiry. Using high-throughput affinity-purification mass spectrometry, we identify interacting partners for 2,594 human proteins in HEK293T cells. The resulting network (BioPlex) contains 23,744 interactions among 7,668 proteins with 86% previously undocumented. BioPlex accurately depicts known complexes, attaining 80%-100% coverage for most CORUM complexes. The network ... [more]
Quantitative Score
- 0.980201667 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex 1.0 HEK 293T cells CompPASS score = 0.980201667, threshold = 0.75. Quantitative scores calculated by CompPASS-Plus (Huttlin et al. Cell, 2015, PMID: 26186194).
- See BioPlex Interactome for details (https://bioplex.hms.harvard.edu/index.php).
- This data has also been reanalyzed as part of BioPlex 2.0 (PMID: 28514442) and BioPlex 3.0 (PMID: 33961781). Only scores from within BioPlex 1.0 (PMID: 26186194) should be compared directly.
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| TNFRSF10B VAMP3 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | 0.9388 | BioGRID | 2253724 | |
| TNFRSF10B VAMP3 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | 0.7847 | BioGRID | 3045342 |
Curated By
- BioGRID