BAIT
SMARCD3
BAF60C, CRACD3, Rsc6p
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
GO Process (9)
GO Function (7)
GO Component (7)
Gene Ontology Biological Process
- cellular lipid metabolic process [TAS]
- chromatin remodeling [IC, IDA]
- neural retina development [IEP]
- nucleosome disassembly [IDA]
- positive regulation of neuroblast proliferation [IDA]
- positive regulation of transcription, DNA-templated [IDA]
- regulation of transcription from RNA polymerase II promoter [IMP, NAS]
- small molecule metabolic process [TAS]
- transcription, DNA-templated [IDA]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
TBL1XR1
C21, DC42, IRA1, TBLR1
transducin (beta)-like 1 X-linked receptor 1
GO Process (9)
GO Function (6)
GO Component (5)
Gene Ontology Biological Process
- Notch signaling pathway [TAS]
- canonical Wnt signaling pathway [IMP]
- cellular lipid metabolic process [TAS]
- histone deacetylation [IBA]
- negative regulation of transcription from RNA polymerase II promoter [IDA]
- positive regulation of transcription from RNA polymerase II promoter [IDA]
- positive regulation of transcription, DNA-templated [IDA]
- proteasome-mediated ubiquitin-dependent protein catabolic process [ISS]
- small molecule metabolic process [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Co-fractionation
Interaction inferred from the presence of two or more protein subunits in a partially purified protein preparation. If co-fractionation is demonstrated between 3 or more proteins, then add them as a complex.
Publication
Panorama of ancient metazoan macromolecular complexes
Macromolecular complexes are essential to conserved biological processes, but their prevalence across animals is unclear. By combining extensive biochemical fractionation with quantitative mass spectrometry, here we directly examined the composition of soluble multiprotein complexes among diverse metazoan models. Using an integrative approach, we generated a draft conservation map consisting of more than one million putative high-confidence co-complex interactions for species ... [more]
Nature Sep. 17, 2015; 525(7569);339-44 [Pubmed: 26344197]
Quantitative Score
- 0.5 [Confidence Score]
Throughput
- High Throughput
Additional Notes
- Fractionation was combined with mass spectrometry from five diverse animal species to predict co-complex protein interactions conserved across metazoa using an integrative computational scoring procedure along with an SVM approach. The significant data set of 16655 PPI, was derived from a set of more than 1M interactions by examining a ROC curve of predicted interactions against reference annotated complexes at a 67.5% cumulative precision.
Curated By
- BioGRID