UBC
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
TNFAIP3
Gene Ontology Biological Process
- B-1 B cell homeostasis [IMP]
- cellular response to hydrogen peroxide [IMP]
- cellular response to lipopolysaccharide [ISO]
- establishment of protein localization to vacuole [IDA]
- marginal zone B cell differentiation [NAS]
- negative regulation of B cell activation [IDA]
- negative regulation of CD40 signaling pathway [ISO]
- negative regulation of I-kappaB kinase/NF-kappaB signaling [IMP, ISO]
- negative regulation of NF-kappaB transcription factor activity [ISO]
- negative regulation of autophagy [NAS]
- negative regulation of cell death [IMP]
- negative regulation of chronic inflammatory response [IMP]
- negative regulation of cyclin-dependent protein serine/threonine kinase activity [IDA]
- negative regulation of endothelial cell apoptotic process [ISO]
- negative regulation of extrinsic apoptotic signaling pathway via death domain receptors [ISO, NAS]
- negative regulation of granuloma formation [NAS]
- negative regulation of heterotypic cell-cell adhesion [NAS]
- negative regulation of inflammatory response [IDA, IMP]
- negative regulation of innate immune response [IMP]
- negative regulation of interleukin-1 beta production [IMP]
- negative regulation of interleukin-2 production [ISO]
- negative regulation of interleukin-6 production [IMP]
- negative regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway [IMP]
- negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway [IDA]
- negative regulation of protein ubiquitination [ISO]
- negative regulation of smooth muscle cell proliferation [ISO]
- negative regulation of toll-like receptor 3 signaling pathway [ISO]
- negative regulation of toll-like receptor 5 signaling pathway [IDA]
- negative regulation of tumor necrosis factor production [IMP]
- positive regulation of cellular protein catabolic process [IDA]
- positive regulation of hepatocyte proliferation [IDA]
- positive regulation of protein catabolic process [ISO]
- protein K11-linked deubiquitination [ISO]
- protein K48-linked deubiquitination [ISO]
- protein K48-linked ubiquitination [ISO]
- protein K63-linked deubiquitination [IDA, ISO]
- protein deubiquitination [IDA]
- proteolysis [ISO]
- regulation of germinal center formation [IMP]
- regulation of immunoglobulin production [IC]
- regulation of innate immune response [IC]
- response to molecule of bacterial origin [IDA, ISO]
- response to muramyl dipeptide [IMP]
- response to wounding [NAS]
- tolerance induction to lipopolysaccharide [ISO]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Reconstituted Complex
An interaction is inferred between proteins in vitro. This can include proteins in recombinant form or proteins isolated directly from cells with recombinant or purified bait. For example, GST pull-down assays where a GST-tagged protein is first isolated and then used to fish interactors from cell lysates are considered reconstituted complexes (e.g. PUBMED: 14657240, Fig. 4A or PUBMED: 14761940, Fig. 5). This can also include gel-shifts, surface plasmon resonance, isothermal titration calorimetry (ITC) and bio-layer interferometry (BLI) experiments. The bait-hit directionality may not be clear for 2 interacting proteins. In these cases the directionality is up to the discretion of the curator.
Publication
An Interaction Landscape of Ubiquitin Signaling.
Intracellular signaling via the covalent attachment of different ubiquitin linkages to protein substrates is fundamental to many cellular processes. Although linkage-selective ubiquitin interactors have been studied on a case-by-case basis, proteome-wide analyses have not been conducted yet. Here, we present ubiquitin interactor affinity enrichment-mass spectrometry (UbIA-MS), a quantitative interaction proteomics method that makes use of chemically synthesized diubiquitin to enrich ... [more]
Throughput
- High Throughput
Additional Notes
- #LPPI
- Chemically synthesized diubiquitin
- Likely protein-protein interaction
- Mouse embryonic stem cells (ESCs)
- Ubiquitin interactor affinity enrichment-mass spectrometry (UbIA-MS)
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| TNFAIP3 UBC | Reconstituted Complex Reconstituted Complex An interaction is inferred between proteins in vitro. This can include proteins in recombinant form or proteins isolated directly from cells with recombinant or purified bait. For example, GST pull-down assays where a GST-tagged protein is first isolated and then used to fish interactors from cell lysates are considered reconstituted complexes (e.g. PUBMED: 14657240, Fig. 4A or PUBMED: 14761940, Fig. 5). This can also include gel-shifts, surface plasmon resonance, isothermal titration calorimetry (ITC) and bio-layer interferometry (BLI) experiments. The bait-hit directionality may not be clear for 2 interacting proteins. In these cases the directionality is up to the discretion of the curator. | Low | - | BioGRID | 1106913 |
Curated By
- BioGRID