UBC
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
MYO5A
Gene Ontology Biological Process
- actin filament-based movement [IDA, ISO]
- anagen [IMP]
- cellular response to insulin stimulus [IMP]
- developmental pigmentation [IMP]
- endoplasmic reticulum localization [IMP]
- exocytosis [IMP]
- insulin secretion [IMP]
- locomotion involved in locomotory behavior [IMP]
- long-chain fatty acid biosynthetic process [IMP]
- melanin biosynthetic process [IMP]
- melanin metabolic process [IMP]
- melanocyte differentiation [IMP]
- melanosome localization [IMP]
- melanosome transport [IDA, IMP]
- metabolic process [ISO]
- myelination [IMP]
- neuromuscular process controlling balance [IMP]
- odontogenesis [IDA]
- pigmentation [IMP, ISA]
- post-Golgi vesicle-mediated transport [ISO]
- protein localization to plasma membrane [IMP]
- regulation of exocytosis [ISO]
- regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity [IMP]
- secretory granule localization [IMP, ISO]
- synapse organization [IMP]
- synaptic transmission [IMP]
- vesicle transport along actin filament [ISO, TAS]
- vesicle-mediated transport [IMP]
- visual perception [IMP]
Gene Ontology Molecular Function- ATP binding [ISO]
- ATP-dependent protein binding [ISO]
- Rab GTPase binding [IPI, ISO]
- SNARE binding [ISO]
- actin binding [IDA]
- calcium ion binding [IDA]
- calcium-dependent protein binding [ISO]
- calmodulin binding [IDA]
- microfilament motor activity [IDA, ISO]
- motor activity [IDA, ISO]
- poly(A) RNA binding [ISO]
- protein binding [IPI]
- protein dimerization activity [ISO]
- protein heterodimerization activity [ISO]
- syntaxin-1 binding [ISO]
- ATP binding [ISO]
- ATP-dependent protein binding [ISO]
- Rab GTPase binding [IPI, ISO]
- SNARE binding [ISO]
- actin binding [IDA]
- calcium ion binding [IDA]
- calcium-dependent protein binding [ISO]
- calmodulin binding [IDA]
- microfilament motor activity [IDA, ISO]
- motor activity [IDA, ISO]
- poly(A) RNA binding [ISO]
- protein binding [IPI]
- protein dimerization activity [ISO]
- protein heterodimerization activity [ISO]
- syntaxin-1 binding [ISO]
Gene Ontology Cellular Component
- Golgi apparatus [IDA]
- actin filament [ISO]
- actomyosin [IDA]
- actomyosin, myosin complex part [ISO]
- axon [ISO]
- cell [IMP]
- cytoplasm [IDA, ISO]
- cytosol [ISO]
- early endosome [ISO]
- endoplasmic reticulum [ISO]
- extracellular vesicular exosome [ISO]
- filopodium tip [ISO]
- insulin-responsive compartment [IDA]
- intermediate filament [IDA]
- late endosome [ISO]
- lysosome [ISO]
- melanosome [IDA]
- membrane [ISO]
- microtubule plus-end [IDA]
- myosin complex [IDA]
- neuron projection [ISO]
- neuronal cell body [IDA, ISO]
- peroxisome [ISO]
- photoreceptor outer segment [IDA]
- recycling endosome [ISO]
- ruffle [ISO]
- secretory granule [IDA, ISO]
- synaptic vesicle [ISO]
- vesicle [ISO]
Reconstituted Complex
An interaction is inferred between proteins in vitro. This can include proteins in recombinant form or proteins isolated directly from cells with recombinant or purified bait. For example, GST pull-down assays where a GST-tagged protein is first isolated and then used to fish interactors from cell lysates are considered reconstituted complexes (e.g. PUBMED: 14657240, Fig. 4A or PUBMED: 14761940, Fig. 5). This can also include gel-shifts, surface plasmon resonance, isothermal titration calorimetry (ITC) and bio-layer interferometry (BLI) experiments. The bait-hit directionality may not be clear for 2 interacting proteins. In these cases the directionality is up to the discretion of the curator.
Publication
An Interaction Landscape of Ubiquitin Signaling.
Intracellular signaling via the covalent attachment of different ubiquitin linkages to protein substrates is fundamental to many cellular processes. Although linkage-selective ubiquitin interactors have been studied on a case-by-case basis, proteome-wide analyses have not been conducted yet. Here, we present ubiquitin interactor affinity enrichment-mass spectrometry (UbIA-MS), a quantitative interaction proteomics method that makes use of chemically synthesized diubiquitin to enrich ... [more]
Throughput
- High Throughput
Additional Notes
- #LPPI
- Chemically synthesized diubiquitin
- Likely protein-protein interaction
- Mouse embryonic stem cells (ESCs)
- Ubiquitin interactor affinity enrichment-mass spectrometry (UbIA-MS)
Curated By
- BioGRID