SHANK3
Gene Ontology Biological Process
- MAPK cascade [IGI]
- N-methyl-D-aspartate receptor clustering [IMP]
- adult behavior [ISO]
- alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering [IMP]
- brain morphogenesis [IMP]
- dendritic spine morphogenesis [IMP]
- embryonic epithelial tube formation [IGI]
- guanylate kinase-associated protein clustering [IMP]
- learning [IMP, ISO]
- locomotory exploration behavior [IMP]
- memory [IMP]
- negative regulation of actin filament bundle assembly [IDA]
- negative regulation of cell volume [IMP]
- neuromuscular process controlling balance [IMP]
- positive regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity [IMP]
- positive regulation of dendritic spine development [IMP]
- positive regulation of excitatory postsynaptic membrane potential [IMP]
- positive regulation of glutamate receptor signaling pathway [IMP, ISO]
- positive regulation of long-term neuronal synaptic plasticity [IMP]
- positive regulation of synapse structural plasticity [IMP]
- positive regulation of synaptic transmission, glutamatergic [IMP]
- postsynaptic density assembly [IMP]
- protein oligomerization [ISO]
- regulation of behavioral fear response [IMP]
- regulation of dendritic spine morphogenesis [IMP]
- regulation of grooming behavior [IMP]
- regulation of long term synaptic depression [IMP]
- regulation of long-term synaptic potentiation [IMP]
- social behavior [IMP, ISO]
- striatal medium spiny neuron differentiation [IMP]
- synapse assembly [IMP]
- vocal learning [ISO]
- vocalization behavior [IMP, ISO]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
SHANK1
Gene Ontology Biological Process
- adult behavior [ISO]
- associative learning [IMP]
- dendritic spine morphogenesis [IMP]
- determination of affect [ISO]
- habituation [IMP]
- long-term memory [IMP]
- negative regulation of actin filament bundle assembly [IDA]
- neuromuscular process controlling balance [IMP]
- olfactory behavior [IMP]
- positive regulation of dendritic spine development [ISO]
- positive regulation of excitatory postsynaptic membrane potential [IMP]
- protein complex assembly [ISO]
- protein localization to synapse [IMP]
- regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity [IMP]
- righting reflex [IMP]
- social behavior [IMP, ISO]
- synapse maturation [ISO]
- vocalization behavior [IMP, ISO]
Gene Ontology Molecular Function- GKAP/Homer scaffold activity [IMP, ISO]
- SH3 domain binding [ISO]
- ankyrin repeat binding [ISO]
- identical protein binding [ISO]
- ionotropic glutamate receptor binding [IPI, ISO]
- protein C-terminus binding [ISO]
- protein complex binding [ISO]
- receptor signaling complex scaffold activity [ISO]
- scaffold protein binding [ISO]
- somatostatin receptor binding [ISO]
- GKAP/Homer scaffold activity [IMP, ISO]
- SH3 domain binding [ISO]
- ankyrin repeat binding [ISO]
- identical protein binding [ISO]
- ionotropic glutamate receptor binding [IPI, ISO]
- protein C-terminus binding [ISO]
- protein complex binding [ISO]
- receptor signaling complex scaffold activity [ISO]
- scaffold protein binding [ISO]
- somatostatin receptor binding [ISO]
Gene Ontology Cellular Component
- N-methyl-D-aspartate selective glutamate receptor complex [ISO]
- dendrite [IDA]
- dendritic spine [IDA, ISO]
- excitatory synapse [IDA]
- ionotropic glutamate receptor complex [IDA]
- membrane [ISO]
- neuron projection [IDA]
- neuronal postsynaptic density [IDA]
- plasma membrane [IDA]
- postsynaptic membrane [IDA, ISO]
- synapse [ISO]
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Spatiotemporal profile of postsynaptic interactomes integrates components of complex brain disorders.
The postsynaptic density (PSD) contains a collection of scaffold proteins used for assembling synaptic signaling complexes. However, it is not known how the core-scaffold machinery associates in protein-interaction networks or how proteins encoded by genes involved in complex brain disorders are distributed through spatiotemporal protein complexes. Here using immunopurification, proteomics and bioinformatics, we isolated 2,876 proteins across 41 in vivo ... [more]
Throughput
- High Throughput
Additional Notes
- Developmental stage: Adult
- Developmental stage: e14
- Developmental stage: p14
- Developmental stage: p7
- Postsynaptic density (PSD) scaffold protein Shank3 was immunoprecipitated and its interactors were identified via mass spec.
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| SHANK3 SHANK1 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | - | BioGRID | - | |
| SHANK3 SHANK1 | Proximity Label-MS Proximity Label-MS An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods. | High | 0.4385 | BioGRID | 3499767 |
Curated By
- BioGRID