An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.

Publication

A Map of Human Mitochondrial Protein Interactions Linked to Neurodegeneration Reveals New Mechanisms of Redox Homeostasis and NF-ÎºB Signaling.

Malty RH, Aoki H, Kumar A, Phanse S, Amin S, Zhang Q, Minic Z, Goebels F, Musso G, Wu Z, Abou-Tok H, Meyer M, Deineko V, Kassir S, Sidhu V, Jessulat M, Scott NE, Xiong X, Vlasblom J, Prasad B, Foster LJ, Alberio T, Garavaglia B, Yu H, Bader GD, Nakamura K, Parkinson J, Babu M

Mitochondrial protein (MP) dysfunction has been linked to neurodegenerative disorders (NDs); however, the discovery of the molecular mechanisms underlying NDs has been impeded by the limited characterization of interactions governing MP function. Here, using mass spectrometry (MS)-based analysis of 210 affinity-purified mitochondrial (mt) fractions isolated from 27 epitope-tagged human ND-linked MPs in HEK293 cells, we report a high-confidence MP network ... [more]

Cell Syst Nov. 07, 2017; (); [Pubmed: 29128334]

Quantitative Score

0.000280031 [Confidence Score]

Throughput

High Throughput

Additional Notes

HEK293 cell line (Antibody; IP/MS)
HEK293 cell line (FLAG TAGGED; AP/MS)
Normalized Spectral Abundance Factor (NSAF) scores were associated with each mitochondrial protein (MP) interaction. High confidence MP interactions were filtered at a confidence threshold of 90%.

Curated By

BioGRID

Interaction Summary

DLST

Gene Ontology Biological Process

Gene Ontology Cellular Component

RAD50

Gene Ontology Biological Process

Gene Ontology Molecular Function

3'-5' exonuclease activity [IDA]ATP-dependent DNA helicase activity [IMP]DNA binding [IDA]protein binding [IPI]protein binding, bridging [IDA]single-stranded DNA endodeoxyribonuclease activity [IDA]