PHYB
Gene Ontology Biological Process
- abscisic acid metabolic process [IMP]
- chromatin organization [IMP]
- circadian regulation of calcium ion oscillation [IMP]
- entrainment of circadian clock [IMP]
- gravitropism [IMP]
- jasmonic acid mediated signaling pathway [IMP]
- photomorphogenesis [IMP]
- photosynthesis [IMP]
- phototropism [IMP]
- red light signaling pathway [IMP]
- regulation of defense response [IMP]
- regulation of seed germination [IMP]
- regulation of transcription, DNA-templated [ISS]
- response to cold [IMP]
- response to far red light [IMP]
- response to low fluence red light stimulus [IMP]
- stomatal complex development [IMP]
- transpiration [IMP]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
PKS1
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Phenotypic Suppression
A genetic interaction is inferred when mutation or over expression of one gene results in suppression of any phenotype (other than lethality/growth defect) associated with mutation or over expression of another gene.
Publication
PKS1 plays a role in red-light-based positive phototropism in roots.
Aerial parts of plants curve towards the light (i.e. positive phototropism), and roots typically grow away from the light (i.e. negative phototropism). In addition, Arabidopsis roots exhibit positive phototropism relative to red light (RL), and this response is mediated by phytochromes A and B (phyA and phyB). Upon light stimulation, phyA and phyB interact with the phytochrome kinase substrate (PKS1) ... [more]
Throughput
- Low Throughput
Additional Notes
- Pks1 suppresses the elongated root phenotype of phyB.
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| PHYB PKS1 | Reconstituted Complex Reconstituted Complex An interaction is inferred between proteins in vitro. This can include proteins in recombinant form or proteins isolated directly from cells with recombinant or purified bait. For example, GST pull-down assays where a GST-tagged protein is first isolated and then used to fish interactors from cell lysates are considered reconstituted complexes (e.g. PUBMED: 14657240, Fig. 4A or PUBMED: 14761940, Fig. 5). This can also include gel-shifts, surface plasmon resonance, isothermal titration calorimetry (ITC) and bio-layer interferometry (BLI) experiments. The bait-hit directionality may not be clear for 2 interacting proteins. In these cases the directionality is up to the discretion of the curator. | Low | - | BioGRID | 268468 | |
| PHYB PKS1 | Two-hybrid Two-hybrid Bait protein expressed as a DNA binding domain (DBD) fusion and prey expressed as a transcriptional activation domain (TAD) fusion and interaction measured by reporter gene activation. | Low | - | BioGRID | - |
Curated By
- BioGRID