BAIT
IKBKE
IKK-E, IKK-i, IKKE, IKKI, RP11-534L20.1
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon
GO Process (12)
GO Function (2)
GO Component (6)
Gene Ontology Biological Process
- MyD88-independent toll-like receptor signaling pathway [TAS]
- NIK/NF-kappaB signaling [IDA]
- TRIF-dependent toll-like receptor signaling pathway [TAS]
- immune response [NAS]
- innate immune response [TAS]
- intrinsic apoptotic signaling pathway in response to DNA damage [IMP]
- negative regulation of type I interferon production [TAS]
- positive regulation of I-kappaB kinase/NF-kappaB signaling [IEP]
- protein phosphorylation [IDA]
- toll-like receptor 3 signaling pathway [TAS]
- toll-like receptor 4 signaling pathway [TAS]
- toll-like receptor signaling pathway [TAS]
Gene Ontology Molecular Function
Homo sapiens
PREY
CORO1B
CORONIN-2
coronin, actin binding protein, 1B
GO Process (10)
GO Function (4)
GO Component (9)
Gene Ontology Biological Process
- actin cytoskeleton organization [IBA]
- actin filament branching [IDA]
- actin filament bundle assembly [IDA]
- cell migration [IDA]
- endothelial cell chemotaxis [IDA]
- negative regulation of Arp2/3 complex-mediated actin nucleation [IDA]
- positive regulation of lamellipodium morphogenesis [IDA]
- protein localization to cell leading edge [IDA]
- ruffle organization [IDA]
- wound healing [IDA]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei.
Cells organize their actions partly through tightly controlled protein-protein interactions-collectively termed the interactome. Here we use crosslinking mass spectrometry (XL-MS) to chart the protein-protein interactions in intact human nuclei. Overall, we identified ∼8,700 crosslinks, of which 2/3 represent links connecting distinct proteins. From these data, we gain insights on interactions involving histone proteins. We observed that core histones on the ... [more]
Mol. Cell Proteomics Dec. 01, 2017; 17(10);2018-2033 [Pubmed: 30021884]
Throughput
- High Throughput
Additional Notes
- interaction identified using XL-MS (cross-linking mass spectrometry): TX100-soluble fractions from cells were treated with cross-linker and cross-linked proteins were identified by mass-spectrometry; interaction is undirectional; therefore bait and prey/hit have been assigned arbitrarily; interactions with FDRs (false discovery rates) of 1% or less were reported; this interaction was not detected in parallel experiments using unfractionated cells or TX100-insoluble fractions
Curated By
- BioGRID