BAIT
SNAI1
SLUGH2, SNA, SNAH, SNAIL, SNAIL1, dJ710H13.1
snail family zinc finger 1
GO Process (12)
GO Function (3)
GO Component (2)
Gene Ontology Biological Process
- Notch signaling involved in heart development [ISS]
- epithelial to mesenchymal transition [IDA, ISS]
- mesoderm formation [ISS]
- negative regulation of DNA damage response, signal transduction by p53 class mediator [IMP]
- negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage [IMP]
- negative regulation of transcription from RNA polymerase II promoter [IDA, IMP, ISS]
- negative regulation of vitamin D biosynthetic process [IDA]
- osteoblast differentiation [IEP]
- positive regulation of cell migration [IMP]
- positive regulation of epithelial to mesenchymal transition [IMP, TAS]
- positive regulation of transcription, DNA-templated [IMP]
- regulation of tight junction assembly [IMP]
Gene Ontology Molecular Function
Homo sapiens
PREY
LMNB1
ADLD, LMN, LMN2, LMNB
lamin B1
GO Process (2)
GO Function (0)
GO Component (4)
Gene Ontology Biological Process
Gene Ontology Cellular Component
Homo sapiens
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei.
Cells organize their actions partly through tightly controlled protein-protein interactions-collectively termed the interactome. Here we use crosslinking mass spectrometry (XL-MS) to chart the protein-protein interactions in intact human nuclei. Overall, we identified ∼8,700 crosslinks, of which 2/3 represent links connecting distinct proteins. From these data, we gain insights on interactions involving histone proteins. We observed that core histones on the ... [more]
Mol. Cell Proteomics Dec. 01, 2017; 17(10);2018-2033 [Pubmed: 30021884]
Throughput
- High Throughput
Additional Notes
- interaction identified using XL-MS (cross-linking mass spectrometry): unfractionated cells or TX100-insoluble fractions from cells were treated with cross-linker and cross-linked proteins were identified by mass-spectrometry; interaction is undirectional; therefore bait and prey/hit have been assigned arbitrarily; interactions with FDRs (false discovery rates) of 1% or less were reported; this interaction was not detected in a parallel experiment using TX100-soluble fractions
Curated By
- BioGRID