YAF9
Gene Ontology Biological Process
Gene Ontology Cellular Component
TAF14
Gene Ontology Biological Process
- RNA polymerase II transcriptional preinitiation complex assembly [IC]
- chromatin remodeling [IC]
- histone acetylation [IDA]
- nucleosome mobilization [IDA]
- promoter clearance from RNA polymerase II promoter [IC]
- transcription elongation from RNA polymerase II promoter [IC]
- transcription from RNA polymerase II promoter [IDA]
- transcription initiation from RNA polymerase II promoter [IDA]
- transcriptional start site selection at RNA polymerase II promoter [IC]
Gene Ontology Molecular Function- DNA translocase activity [IDA]
- RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [IC]
- core RNA polymerase II binding transcription factor activity [IDA]
- core RNA polymerase II recruiting transcription factor activity [IC]
- DNA translocase activity [IDA]
- RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly [IC]
- core RNA polymerase II binding transcription factor activity [IDA]
- core RNA polymerase II recruiting transcription factor activity [IC]
Gene Ontology Cellular Component
- Ino80 complex [IDA, IPI]
- NuA3 histone acetyltransferase complex [IDA]
- NuA3a histone acetyltransferase complex [IDA]
- NuA3b histone acetyltransferase complex [IDA]
- SWI/SNF complex [IDA, IPI]
- mediator complex [IPI]
- nucleus [IDA]
- transcription factor TFIID complex [IDA]
- transcription factor TFIIF complex [IDA, IPI]
Synthetic Growth Defect
A genetic interaction is inferred when mutations in separate genes, each of which alone causes a minimal phenotype, result in a significant growth defect under a given condition when combined in the same cell.
Publication
A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation.
Histone acetylation and deacetylation are among the principal mechanisms by which chromatin is regulated during transcription, DNA silencing, and DNA repair. We analyzed patterns of genetic interactions uncovered during comprehensive genome-wide analyses in yeast to probe how histone acetyltransferase (HAT) and histone deacetylase (HDAC) protein complexes interact. The genetic interaction data unveil an underappreciated role of HDACs in maintaining cellular ... [more]
Throughput
- High Throughput|Low Throughput
Ontology Terms
- phenotype: vegetative growth (APO:0000106)
Additional Notes
- High Throughput: dSLAM analysis was performed to determine genome-wide genetic interaction profiles of 38 query genes involved in histone (de)acetylation.
- Low Throughput: Genetic interactions identified using dSLAM were validated by tetrad dissection and/or random spore analysis.
Related interactions
Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
---|---|---|---|---|---|---|
TAF14 YAF9 | Negative Genetic Negative Genetic Mutations/deletions in separate genes, each of which alone causes a minimal phenotype, but when combined in the same cell results in a more severe fitness defect or lethality under a given condition. This term is reserved for high or low throughput studies with scores. | High | -11.5648 | BioGRID | 213831 | |
YAF9 TAF14 | Synthetic Lethality Synthetic Lethality A genetic interaction is inferred when mutations or deletions in separate genes, each of which alone causes a minimal phenotype, result in lethality when combined in the same cell under a given condition. | Low | - | BioGRID | 163098 |
Curated By
- BioGRID