BAIT
LMAN1
ERGIC-53, ERGIC53, F5F8D, FMFD1, MCFD1, MR60, gp58
lectin, mannose-binding, 1
GO Process (10)
GO Function (3)
GO Component (4)
Gene Ontology Biological Process
- ER to Golgi vesicle-mediated transport [TAS]
- Golgi organization [IMP]
- blood coagulation [TAS]
- cellular protein metabolic process [TAS]
- early endosome to Golgi transport [IMP]
- positive regulation of organelle organization [IMP]
- post-translational protein modification [TAS]
- protein N-linked glycosylation via asparagine [TAS]
- protein exit from endoplasmic reticulum [IMP]
- protein folding [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
SYNE2
EDMD5, NUA, NUANCE, Nesp2, Nesprin-2, SYNE-2, TROPH
spectrin repeat containing, nuclear envelope 2
GO Process (5)
GO Function (2)
GO Component (15)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
- SUN-KASH complex [IDA]
- Z disc [IDA]
- aggresome [IDA]
- cytoplasm [IDA]
- extracellular vesicular exosome [IDA]
- filopodium membrane [IDA]
- focal adhesion [IDA]
- intermediate filament cytoskeleton [IDA]
- lamellipodium membrane [IDA]
- mitochondrion [IDA]
- nuclear envelope [IDA]
- nuclear lumen [IDA]
- nuclear membrane [IDA]
- nucleus [IDA]
- sarcoplasmic reticulum [IDA]
Homo sapiens
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
A proximity-dependent biotinylation map of a human cell.
Compartmentalization is a defining characteristic of eukaryotic cells, and partitions distinct biochemical processes into discrete subcellular locations. Microscopy1 and biochemical fractionation coupled with mass spectrometry2-4 have defined the proteomes of a variety of different organelles, but many intracellular compartments have remained refractory to such approaches. Proximity-dependent biotinylation techniques such as BioID provide an alternative approach to define the composition of ... [more]
Nature Jun. 02, 2021; (); [Pubmed: 34079125]
Quantitative Score
- 32.61 [FoldChange]
Throughput
- High Throughput
Additional Notes
- BioID
- SAINTexpress (v.3.6.1) was used to identify proximity interactions and those with a Bayesian FDR =< 0.01 were considered high confidence. The score represents the fold change of the average spectral count in sample replicates relative to the average in control replicates.
Curated By
- BioGRID