BAIT
LYN
JTK8, p53Lyn, p56Lyn
LYN proto-oncogene, Src family tyrosine kinase
GO Process (58)
GO Function (7)
GO Component (9)
Gene Ontology Biological Process
- B cell homeostasis [ISS]
- Fc receptor mediated inhibitory signaling pathway [ISS]
- Fc receptor mediated stimulatory signaling pathway [IBA, ISS]
- Fc-epsilon receptor signaling pathway [TAS]
- Fc-gamma receptor signaling pathway involved in phagocytosis [TAS]
- JAK-STAT cascade involved in growth hormone signaling pathway [TAS]
- T cell costimulation [TAS]
- blood coagulation [TAS]
- cellular response to DNA damage stimulus [IDA]
- cellular response to peptide hormone stimulus [IBA]
- cellular response to retinoic acid [IMP]
- central nervous system development [IBA]
- dendritic cell differentiation [IBA, ISS]
- erythrocyte differentiation [ISS]
- immune response-regulating cell surface receptor signaling pathway [ISS, TAS]
- inflammatory response [IBA]
- innate immune response [IBA, TAS]
- leukocyte migration [TAS]
- lipopolysaccharide-mediated signaling pathway [ISS]
- negative regulation of B cell proliferation [IBA]
- negative regulation of ERK1 and ERK2 cascade [ISS]
- negative regulation of MAP kinase activity [ISS]
- negative regulation of cell proliferation [IMP]
- negative regulation of immune response [TAS]
- negative regulation of intracellular signal transduction [ISS]
- negative regulation of mast cell proliferation [IBA, ISS]
- negative regulation of protein phosphorylation [ISS]
- negative regulation of toll-like receptor 2 signaling pathway [ISS]
- negative regulation of toll-like receptor 4 signaling pathway [ISS]
- peptidyl-tyrosine autophosphorylation [IBA]
- peptidyl-tyrosine phosphorylation [IDA]
- platelet activation [TAS]
- platelet degranulation [IBA, ISS]
- positive regulation of cell proliferation [ISS]
- positive regulation of cellular component movement [IDA]
- positive regulation of dendritic cell apoptotic process [IBA, ISS]
- positive regulation of mast cell proliferation [IMP]
- positive regulation of neuron projection development [IMP]
- positive regulation of stress-activated protein kinase signaling cascade [IDA]
- positive regulation of tyrosine phosphorylation of STAT protein [ISS]
- protein autophosphorylation [IDA]
- protein phosphorylation [IDA]
- regulation of B cell apoptotic process [IBA]
- regulation of B cell receptor signaling pathway [IBA, ISS]
- regulation of ERK1 and ERK2 cascade [ISS]
- regulation of cell adhesion mediated by integrin [IMP]
- regulation of cytokine production [ISS]
- regulation of erythrocyte differentiation [ISS]
- regulation of mast cell activation [ISS]
- regulation of mast cell degranulation [IBA, ISS]
- regulation of monocyte chemotaxis [IMP]
- regulation of platelet aggregation [IBA, ISS]
- regulation of protein phosphorylation [TAS]
- response to hormone [ISS]
- signal transduction [TAS]
- signal transduction by phosphorylation [TAS]
- tolerance induction to self antigen [IBA, ISS, TAS]
- transmembrane receptor protein tyrosine kinase signaling pathway [IMP]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
NOTCH1
AOS5, AOVD1, TAN1, hN1
notch 1
GO Process (77)
GO Function (5)
GO Component (9)
Gene Ontology Biological Process
- Notch receptor processing [TAS]
- Notch signaling involved in heart development [IMP]
- Notch signaling pathway [IMP, TAS]
- aortic valve morphogenesis [IMP]
- arterial endothelial cell differentiation [ISS]
- atrioventricular valve morphogenesis [ISS]
- cardiac atrium morphogenesis [ISS]
- cardiac chamber formation [ISS]
- cardiac epithelial to mesenchymal transition [ISS]
- cardiac left ventricle morphogenesis [ISS]
- cardiac muscle tissue morphogenesis [ISS]
- cardiac right atrium morphogenesis [ISS]
- cardiac septum morphogenesis [ISS]
- cardiac vascular smooth muscle cell development [ISS]
- cardiac ventricle morphogenesis [ISS]
- cell migration involved in endocardial cushion formation [ISS]
- cellular response to follicle-stimulating hormone stimulus [IDA]
- cellular response to vascular endothelial growth factor stimulus [IDA]
- cilium morphogenesis [ISS]
- coronary artery morphogenesis [ISS]
- coronary vein morphogenesis [ISS]
- determination of left/right symmetry [ISS]
- endocardial cell differentiation [ISS]
- endocardial cushion morphogenesis [ISS]
- endocardium development [ISS]
- endocardium morphogenesis [ISS]
- epithelial to mesenchymal transition [ISS]
- epithelial to mesenchymal transition involved in endocardial cushion formation [ISS]
- gene expression [TAS]
- growth involved in heart morphogenesis [ISS]
- heart development [IMP]
- heart looping [ISS]
- heart trabecula morphogenesis [ISS]
- immune response [NAS]
- mesenchymal cell development [ISS]
- mitral valve formation [IMP]
- negative regulation of BMP signaling pathway [ISS]
- negative regulation of anoikis [IMP]
- negative regulation of catalytic activity [ISS]
- negative regulation of cell migration involved in sprouting angiogenesis [IDA]
- negative regulation of cell proliferation [IDA]
- negative regulation of cell-substrate adhesion [IDA]
- negative regulation of endothelial cell chemotaxis [IDA]
- negative regulation of glial cell proliferation [ISS]
- negative regulation of myoblast differentiation [IMP]
- negative regulation of myotube differentiation [ISS]
- negative regulation of neurogenesis [ISS]
- negative regulation of oligodendrocyte differentiation [ISS]
- negative regulation of ossification [ISS]
- negative regulation of osteoblast differentiation [ISS]
- negative regulation of pro-B cell differentiation [ISS]
- negative regulation of stem cell differentiation [IMP]
- negative regulation of transcription from RNA polymerase II promoter [ISS]
- negative regulation of transcription, DNA-templated [ISS]
- neuronal stem cell maintenance [IEP]
- pericardium morphogenesis [ISS]
- positive regulation of BMP signaling pathway [ISS]
- positive regulation of JAK-STAT cascade [ISS]
- positive regulation of astrocyte differentiation [ISS]
- positive regulation of cardiac muscle cell proliferation [ISS]
- positive regulation of cell migration [ISS]
- positive regulation of cell proliferation [IDA, IMP]
- positive regulation of epithelial to mesenchymal transition [IMP]
- positive regulation of transcription from RNA polymerase II promoter [IDA, ISS]
- positive regulation of transcription from RNA polymerase II promoter in response to hypoxia [ISS]
- positive regulation of transcription of Notch receptor target [ISS]
- positive regulation of transcription, DNA-templated [ISS]
- pulmonary valve morphogenesis [IMP]
- regulation of extracellular matrix assembly [ISS]
- regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation [ISS]
- regulation of transcription, DNA-templated [TAS]
- transcription initiation from RNA polymerase II promoter [TAS]
- tube formation [IMP]
- vasculogenesis involved in coronary vascular morphogenesis [ISS]
- venous endothelial cell differentiation [ISS]
- ventricular septum morphogenesis [IMP]
- ventricular trabecula myocardium morphogenesis [ISS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
A proximity-dependent biotinylation map of a human cell.
Compartmentalization is a defining characteristic of eukaryotic cells, and partitions distinct biochemical processes into discrete subcellular locations. Microscopy1 and biochemical fractionation coupled with mass spectrometry2-4 have defined the proteomes of a variety of different organelles, but many intracellular compartments have remained refractory to such approaches. Proximity-dependent biotinylation techniques such as BioID provide an alternative approach to define the composition of ... [more]
Nature Jun. 02, 2021; (); [Pubmed: 34079125]
Quantitative Score
- 35.0 [FoldChange]
Throughput
- High Throughput
Additional Notes
- BioID
- SAINTexpress (v.3.6.1) was used to identify proximity interactions and those with a Bayesian FDR =< 0.01 were considered high confidence. The score represents the fold change of the average spectral count in sample replicates relative to the average in control replicates.
Curated By
- BioGRID