BAIT
RPN2
RIBIIR, RPN-II, RPNII, SWP1, RP3-343K2.2
ribophorin II
GO Process (7)
GO Function (1)
GO Component (5)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
PKD2
APKD2, PC2, PKD4, Pc-2, TRPP2
polycystic kidney disease 2 (autosomal dominant)
GO Process (48)
GO Function (17)
GO Component (19)
Gene Ontology Biological Process
- JAK-STAT cascade [ISS]
- aorta development [IEP]
- branching involved in ureteric bud morphogenesis [IEP]
- calcium ion transmembrane transport [IDA]
- calcium ion transport [IDA, ISS]
- cell cycle arrest [ISS]
- cellular response to fluid shear stress [IMP]
- cellular response to hydrostatic pressure [IDA]
- cellular response to osmotic stress [IDA]
- cellular response to reactive oxygen species [NAS]
- centrosome duplication [NAS]
- cytoplasmic sequestering of transcription factor [IMP]
- detection of mechanical stimulus [IBA, ISS]
- detection of nodal flow [ISS]
- determination of left/right symmetry [ISS]
- determination of liver left/right asymmetry [IMP]
- embryonic placenta development [ISS]
- heart development [IEP]
- heart looping [IMP]
- liver development [IEP]
- mesonephric duct development [IEP]
- mesonephric tubule development [IEP]
- metanephric S-shaped body morphogenesis [IEP]
- metanephric ascending thin limb development [IEP]
- metanephric cortex development [IEP]
- metanephric cortical collecting duct development [IEP]
- metanephric distal tubule development [IEP]
- metanephric mesenchyme development [IEP]
- metanephric part of ureteric bud development [IEP]
- metanephric smooth muscle tissue development [IEP]
- negative regulation of G1/S transition of mitotic cell cycle [IMP]
- negative regulation of cell proliferation [NAS]
- negative regulation of ryanodine-sensitive calcium-release channel activity [ISS]
- neural tube development [IEP]
- placenta blood vessel development [ISS]
- positive regulation of cell cycle arrest [IMP]
- positive regulation of cyclin-dependent protein serine/threonine kinase activity involved in G1/S transition of mitotic cell cycle [IDA]
- positive regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity [IMP]
- positive regulation of nitric oxide biosynthetic process [IMP]
- positive regulation of transcription from RNA polymerase II promoter [IDA, IMP]
- regulation of cAMP metabolic process [ISS]
- regulation of calcium ion import [IDA]
- regulation of cell proliferation [IMP]
- release of sequestered calcium ion into cytosol [IDA, IMP]
- renal artery morphogenesis [IEP]
- renal tubule morphogenesis [ISS]
- sodium ion transmembrane transport [IDA]
- spinal cord development [IEP]
Gene Ontology Molecular Function- ATPase binding [ISS]
- HLH domain binding [IPI]
- actinin binding [IDA]
- calcium ion binding [ISS]
- calcium-induced calcium release activity [IDA]
- cytoskeletal protein binding [IDA]
- identical protein binding [IPI, ISS]
- ion channel binding [IPI]
- phosphoprotein binding [IPI]
- potassium channel activity [ISS]
- protein binding [IPI]
- protein homodimerization activity [IDA]
- receptor binding [IPI]
- voltage-gated calcium channel activity [IDA]
- voltage-gated cation channel activity [IDA]
- voltage-gated ion channel activity [IDA]
- voltage-gated sodium channel activity [IDA]
- ATPase binding [ISS]
- HLH domain binding [IPI]
- actinin binding [IDA]
- calcium ion binding [ISS]
- calcium-induced calcium release activity [IDA]
- cytoskeletal protein binding [IDA]
- identical protein binding [IPI, ISS]
- ion channel binding [IPI]
- phosphoprotein binding [IPI]
- potassium channel activity [ISS]
- protein binding [IPI]
- protein homodimerization activity [IDA]
- receptor binding [IPI]
- voltage-gated calcium channel activity [IDA]
- voltage-gated cation channel activity [IDA]
- voltage-gated ion channel activity [IDA]
- voltage-gated sodium channel activity [IDA]
Gene Ontology Cellular Component
- basal cortex [IDA]
- basal plasma membrane [IDA]
- cell-cell junction [ISS]
- ciliary basal body [IDA]
- cilium [ISS]
- cytoplasm [IDA, IMP]
- endoplasmic reticulum [IDA, IMP]
- endoplasmic reticulum membrane [IDA]
- extracellular vesicular exosome [IDA]
- filamentous actin [IDA]
- integral component of cytoplasmic side of endoplasmic reticulum membrane [IDA]
- integral component of lumenal side of endoplasmic reticulum membrane [IDA]
- integral component of plasma membrane [IDA]
- lamellipodium [IDA]
- mitotic spindle [IDA]
- motile primary cilium [ISS]
- nonmotile primary cilium [ISS]
- plasma membrane [IDA]
- polycystin complex [ISS]
Homo sapiens
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
A proximity-dependent biotinylation map of a human cell.
Compartmentalization is a defining characteristic of eukaryotic cells, and partitions distinct biochemical processes into discrete subcellular locations. Microscopy1 and biochemical fractionation coupled with mass spectrometry2-4 have defined the proteomes of a variety of different organelles, but many intracellular compartments have remained refractory to such approaches. Proximity-dependent biotinylation techniques such as BioID provide an alternative approach to define the composition of ... [more]
Nature Jun. 02, 2021; (); [Pubmed: 34079125]
Quantitative Score
- 230.0 [FoldChange]
Throughput
- High Throughput
Additional Notes
- BioID
- SAINTexpress (v.3.6.1) was used to identify proximity interactions and those with a Bayesian FDR =< 0.01 were considered high confidence. The score represents the fold change of the average spectral count in sample replicates relative to the average in control replicates.
Curated By
- BioGRID