BAIT
SSR1
TRAPA, PSEC0262
signal sequence receptor, alpha
GO Process (8)
GO Function (1)
GO Component (2)
Gene Ontology Biological Process
- SRP-dependent cotranslational protein targeting to membrane [TAS]
- activation of signaling protein activity involved in unfolded protein response [TAS]
- cellular protein metabolic process [TAS]
- cotranslational protein targeting to membrane [TAS]
- endoplasmic reticulum unfolded protein response [TAS]
- gene expression [TAS]
- positive regulation of cell proliferation [TAS]
- translation [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
RAB11B
H-YPT3
RAB11B, member RAS oncogene family
GO Process (15)
GO Function (5)
GO Component (4)
Gene Ontology Biological Process
- GTP catabolic process [IDA]
- Rab protein signal transduction [IBA]
- cellular response to acidic pH [IDA]
- constitutive secretory pathway [IMP]
- establishment of protein localization to membrane [IMP]
- insulin secretion involved in cellular response to glucose stimulus [ISS]
- intracellular protein transport [IBA]
- melanosome transport [IBA, ISS]
- receptor recycling [ISS]
- regulated secretory pathway [IBA, ISS]
- regulation of anion transport [IMP]
- regulation of endocytic recycling [ISS]
- regulation of protein localization to cell surface [IMP]
- retrograde transport, endosome to plasma membrane [IMP]
- transferrin transport [ISS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
A proximity-dependent biotinylation map of a human cell.
Compartmentalization is a defining characteristic of eukaryotic cells, and partitions distinct biochemical processes into discrete subcellular locations. Microscopy1 and biochemical fractionation coupled with mass spectrometry2-4 have defined the proteomes of a variety of different organelles, but many intracellular compartments have remained refractory to such approaches. Proximity-dependent biotinylation techniques such as BioID provide an alternative approach to define the composition of ... [more]
Nature Jun. 02, 2021; (); [Pubmed: 34079125]
Quantitative Score
- 25.0 [FoldChange]
Throughput
- High Throughput
Additional Notes
- BioID
- SAINTexpress (v.3.6.1) was used to identify proximity interactions and those with a Bayesian FDR =< 0.01 were considered high confidence. The score represents the fold change of the average spectral count in sample replicates relative to the average in control replicates.
Curated By
- BioGRID