BAIT
NPTN
GP55, GP65, SDFR1, SDR1, np55, np65
neuroplastin
GO Process (7)
GO Function (2)
GO Component (2)
Gene Ontology Biological Process
- homophilic cell adhesion via plasma membrane adhesion molecules [ISS]
- long-term synaptic potentiation [ISS]
- positive regulation of cytosolic calcium ion concentration [ISS]
- positive regulation of fibroblast growth factor receptor signaling pathway [ISS]
- positive regulation of long-term neuronal synaptic plasticity [ISS]
- positive regulation of neuron projection development [ISS]
- positive regulation of protein phosphorylation [ISS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
MMS19
MET18, MMS19L, hMMS19, RP11-452K12.5
MMS19 nucleotide excision repair homolog (S. cerevisiae)
GO Process (11)
GO Function (5)
GO Component (8)
Gene Ontology Biological Process
- DNA metabolic process [IMP]
- DNA repair [IMP]
- cellular response to DNA damage stimulus [IMP]
- chromosome segregation [IMP]
- iron-sulfur cluster assembly [IMP]
- nucleotide-excision repair [NAS, TAS]
- phosphorelay signal transduction system [NAS]
- positive regulation of transcription, DNA-templated [IMP]
- response to hormone [NAS]
- small molecule metabolic process [TAS]
- transcription, DNA-templated [NAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Cell May. 27, 2021; 184(11);3022-3040.e28 [Pubmed: 33961781]
Quantitative Score
- 0.755854709 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex 3.0 HEK 293T cells CompPASS score = 0.755854709, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HEK293T.
- This data may be re-scored from BioPlex 1.0 (PMID: 26186194) and BioPlex 2.0 (PMID: 28514442). Only scores from within the same cell line in BioPlex 3.0 (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Curated By
- BioGRID