BAIT
NDUFA13
B16.6, CDA016, GRIM-19, GRIM19, CGI-39
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13
GO Process (14)
GO Function (4)
GO Component (8)
Gene Ontology Biological Process
- apoptotic signaling pathway [IDA]
- cellular metabolic process [TAS]
- cellular response to interferon-beta [IDA]
- cellular response to retinoic acid [IDA]
- negative regulation of cell growth [IDA, IMP]
- negative regulation of intrinsic apoptotic signaling pathway [IMP]
- negative regulation of transcription, DNA-templated [IDA]
- positive regulation of cysteine-type endopeptidase activity involved in apoptotic process [IGI]
- positive regulation of peptidase activity [IC]
- positive regulation of protein catabolic process [IGI]
- protein import into mitochondrial inner membrane [IDA]
- reactive oxygen species metabolic process [IMP]
- respiratory electron transport chain [TAS]
- small molecule metabolic process [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
PYCARD
ASC, CARD5, TMS, TMS-1, TMS1
PYD and CARD domain containing
GO Process (48)
GO Function (4)
GO Component (9)
Gene Ontology Biological Process
- activation of cysteine-type endopeptidase activity involved in apoptotic process [NAS]
- activation of innate immune response [IDA]
- apoptotic process [TAS]
- cellular response to interleukin-1 [IDA]
- cellular response to lipopolysaccharide [IDA]
- cellular response to tumor necrosis factor [IDA]
- defense response to Gram-negative bacterium [IMP]
- defense response to virus [IDA]
- innate immune response [TAS]
- intrinsic apoptotic signaling pathway by p53 class mediator [IMP]
- intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator [IMP]
- macropinocytosis [ISS]
- myeloid dendritic cell activation [IMP]
- myeloid dendritic cell activation involved in immune response [ISS]
- negative regulation of I-kappaB kinase/NF-kappaB signaling [IDA]
- negative regulation of NF-kappaB transcription factor activity [IMP]
- negative regulation of interferon-beta production [IMP]
- negative regulation of protein serine/threonine kinase activity [IDA]
- nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway [TAS]
- positive regulation of ERK1 and ERK2 cascade [IMP]
- positive regulation of JNK cascade [IMP]
- positive regulation of NF-kappaB transcription factor activity [IDA]
- positive regulation of T cell activation [IMP]
- positive regulation of T cell migration [ISS]
- positive regulation of actin filament polymerization [ISS]
- positive regulation of activated T cell proliferation [ISS]
- positive regulation of adaptive immune response [IMP]
- positive regulation of antigen processing and presentation of peptide antigen via MHC class II [ISS]
- positive regulation of apoptotic process [IDA]
- positive regulation of chemokine secretion [IMP]
- positive regulation of cysteine-type endopeptidase activity [IDA]
- positive regulation of cysteine-type endopeptidase activity involved in apoptotic process [IDA]
- positive regulation of extrinsic apoptotic signaling pathway [IDA]
- positive regulation of interferon-gamma production [ISS]
- positive regulation of interleukin-1 beta secretion [IDA]
- positive regulation of interleukin-10 secretion [IMP]
- positive regulation of interleukin-6 production [ISS]
- positive regulation of interleukin-6 secretion [IMP]
- positive regulation of interleukin-8 secretion [IMP]
- positive regulation of phagocytosis [ISS]
- positive regulation of release of cytochrome c from mitochondria [IDA]
- positive regulation of sequence-specific DNA binding transcription factor activity [IDA]
- positive regulation of tumor necrosis factor production [IMP]
- regulation of intrinsic apoptotic signaling pathway [IDA]
- regulation of protein stability [ISS]
- regulation of tumor necrosis factor-mediated signaling pathway [IMP]
- signal transduction [NAS]
- tumor necrosis factor-mediated signaling pathway [IDA]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Cell May. 27, 2021; 184(11);3022-3040.e28 [Pubmed: 33961781]
Quantitative Score
- 0.999945029 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex 3.0 HEK 293T cells CompPASS score = 0.999945029, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HEK293T.
- This data may be re-scored from BioPlex 1.0 (PMID: 26186194) and BioPlex 2.0 (PMID: 28514442). Only scores from within the same cell line in BioPlex 3.0 (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Curated By
- BioGRID