BAIT
SEMA4C
M-SEMA-F, SEMACL1, SEMAF, SEMAI, UNQ5855/PRO34487
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
GO Process (5)
GO Function (0)
GO Component (3)
Gene Ontology Biological Process
Gene Ontology Cellular Component
Homo sapiens
PREY
FLCN
BHD, FLCL
folliculin
GO Process (28)
GO Function (2)
GO Component (5)
Gene Ontology Biological Process
- TOR signaling [IMP]
- cell-cell junction assembly [ISS]
- hemopoiesis [ISS]
- in utero embryonic development [ISS]
- negative regulation of ATP biosynthetic process [ISS]
- negative regulation of ERK1 and ERK2 cascade [ISS]
- negative regulation of Rho protein signal transduction [IMP]
- negative regulation of TOR signaling [ISS]
- negative regulation of cell growth [IDA]
- negative regulation of cell migration [IMP]
- negative regulation of cell proliferation involved in kidney development [ISS]
- negative regulation of energy homeostasis [ISS]
- negative regulation of gene expression [ISS]
- negative regulation of mitochondrion organization [ISS]
- negative regulation of protein kinase B signaling [ISS]
- negative regulation of protein localization to nucleus [IDA]
- negative regulation of transcription from RNA polymerase II promoter [IDA, IMP]
- positive regulation of TOR signaling [ISS]
- positive regulation of apoptotic process [ISS]
- positive regulation of cell adhesion [IMP]
- positive regulation of protein phosphorylation [ISS]
- positive regulation of transcription from RNA polymerase II promoter [IDA, IMP]
- positive regulation of transforming growth factor beta receptor signaling pathway [IDA, ISS]
- regulation of TOR signaling [ISS]
- regulation of cytokinesis [IMP]
- regulation of histone acetylation [ISS]
- regulation of pro-B cell differentiation [ISS]
- regulation of protein phosphorylation [IDA]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Cell May. 27, 2021; 184(11);3022-3040.e28 [Pubmed: 33961781]
Quantitative Score
- 0.999686068 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex 3.0 HEK 293T cells CompPASS score = 0.999686068, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HEK293T.
- This data may be re-scored from BioPlex 1.0 (PMID: 26186194) and BioPlex 2.0 (PMID: 28514442). Only scores from within the same cell line in BioPlex 3.0 (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Curated By
- BioGRID