BAIT
CITED1
MSG1
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1
GO Process (33)
GO Function (9)
GO Component (3)
Gene Ontology Biological Process
- SMAD protein signal transduction [IDA]
- branching involved in ureteric bud morphogenesis [ISS]
- cell proliferation [TAS]
- melanin biosynthetic process [ISS]
- melanocyte differentiation [IMP]
- mesenchymal to epithelial transition [TAS]
- metanephros development [TAS]
- negative regulation of Wnt signaling pathway [TAS]
- negative regulation of neuron apoptotic process [IDA]
- negative regulation of osteoblast differentiation [ISS]
- negative regulation of transcription, DNA-templated [IDA, ISS]
- nucleocytoplasmic transport [IDA]
- pigmentation [IMP]
- placenta development [ISS]
- positive regulation of gene expression [ISS]
- positive regulation of transcription, DNA-templated [IDA]
- positive regulation of transforming growth factor beta receptor signaling pathway [TAS]
- regulation of transcription from RNA polymerase II promoter [TAS]
- response to cAMP [ISS]
- response to cytokine [ISS]
- response to estrogen [IDA, TAS]
- response to insulin [ISS]
- response to interferon-gamma [ISS]
- response to interleukin-1 [ISS]
- response to interleukin-11 [ISS]
- response to interleukin-2 [ISS]
- response to interleukin-4 [ISS]
- response to interleukin-6 [ISS]
- response to interleukin-9 [ISS]
- response to lipopolysaccharide [ISS]
- response to parathyroid hormone [ISS]
- response to transforming growth factor beta [IDA]
- transforming growth factor beta receptor signaling pathway [IDA]
Gene Ontology Molecular Function- LBD domain binding [IDA]
- chromatin binding [ISS]
- co-SMAD binding [IPI]
- protein C-terminus binding [IPI]
- protein binding [IPI]
- protein homodimerization activity [IDA]
- sequence-specific DNA binding transcription factor activity [NAS]
- transcription coactivator activity [IDA]
- transcription regulatory region DNA binding [IDA]
- LBD domain binding [IDA]
- chromatin binding [ISS]
- co-SMAD binding [IPI]
- protein C-terminus binding [IPI]
- protein binding [IPI]
- protein homodimerization activity [IDA]
- sequence-specific DNA binding transcription factor activity [NAS]
- transcription coactivator activity [IDA]
- transcription regulatory region DNA binding [IDA]
Homo sapiens
PREY
VPS35
MEM3, PARK17, TCCCTA00141
vacuolar protein sorting 35 homolog (S. cerevisiae)
GO Process (5)
GO Function (2)
GO Component (7)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Cell May. 27, 2021; 184(11);3022-3040.e28 [Pubmed: 33961781]
Quantitative Score
- 0.966703006 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex HCT HCT116 cells CompPASS score = 0.966703006, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HCT116.
- Only scores from within the same cell line in BioPlex HCT (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Curated By
- BioGRID