SLC9A5
Gene Ontology Biological Process
Gene Ontology Cellular Component
CHP1
Gene Ontology Biological Process
- cellular response to acidic pH [ISS]
- cytoplasmic microtubule organization [ISS]
- membrane docking [ISS]
- membrane fusion [ISS]
- membrane organization [ISS]
- microtubule bundle formation [ISS]
- negative regulation of NF-kappaB transcription factor activity [IDA]
- negative regulation of calcineurin-NFAT signaling cascade [IDA]
- negative regulation of phosphatase activity [IDA]
- negative regulation of protein autophosphorylation [ISS]
- negative regulation of protein import into nucleus [IDA]
- negative regulation of protein kinase activity [ISS]
- negative regulation of protein phosphorylation [ISS]
- negative regulation of protein ubiquitination [ISS]
- positive regulation of protein glycosylation [ISS]
- positive regulation of protein targeting to membrane [ISS]
- positive regulation of protein transport [ISS]
- positive regulation of sodium:proton antiporter activity [IDA, ISS]
- potassium ion transport [TAS]
- protein export from nucleus [ISS]
- protein stabilization [ISS]
- regulation of intracellular pH [IDA]
- regulation of neuron death [IMP]
- small GTPase mediated signal transduction [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Quantitative Score
- 0.995583659 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex HCT HCT116 cells CompPASS score = 0.995583659, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HCT116.
- Only scores from within the same cell line in BioPlex HCT (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| SLC9A5 CHP1 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | 0.9947 | BioGRID | 3823155 | |
| CHP1 SLC9A5 | Reconstituted Complex Reconstituted Complex An interaction is inferred between proteins in vitro. This can include proteins in recombinant form or proteins isolated directly from cells with recombinant or purified bait. For example, GST pull-down assays where a GST-tagged protein is first isolated and then used to fish interactors from cell lysates are considered reconstituted complexes (e.g. PUBMED: 14657240, Fig. 4A or PUBMED: 14761940, Fig. 5). This can also include gel-shifts, surface plasmon resonance, isothermal titration calorimetry (ITC) and bio-layer interferometry (BLI) experiments. The bait-hit directionality may not be clear for 2 interacting proteins. In these cases the directionality is up to the discretion of the curator. | Low | - | BioGRID | - |
Curated By
- BioGRID