BAIT
SUPV3L1
SUV3, RP11-227H15.2
suppressor of var1, 3-like 1 (S. cerevisiae)
GO Process (14)
GO Function (10)
GO Component (5)
Gene Ontology Biological Process
- ATP catabolic process [IDA]
- DNA duplex unwinding [IMP]
- DNA recombination [IMP]
- RNA catabolic process [IMP]
- chromatin maintenance [IMP]
- mitochondrial RNA 3'-end processing [IMP]
- mitochondrial RNA surveillance [IMP]
- mitochondrial mRNA catabolic process [IMP]
- mitochondrial mRNA surveillance [IMP]
- mitochondrial ncRNA surveillance [IMP]
- mitochondrion morphogenesis [IMP]
- negative regulation of apoptotic process [IMP]
- positive regulation of cell growth [IMP]
- positive regulation of mitochondrial RNA catabolic process [IDA, IMP]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
HNRNPH2
FTP3, HNRPH', HNRPH2, hnRNPH'
heterogeneous nuclear ribonucleoprotein H2 (H')
GO Process (3)
GO Function (2)
GO Component (4)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Cell May. 27, 2021; 184(11);3022-3040.e28 [Pubmed: 33961781]
Quantitative Score
- 0.979815732 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex HCT HCT116 cells CompPASS score = 0.979815732, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HCT116.
- Only scores from within the same cell line in BioPlex HCT (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Curated By
- BioGRID