DAXX
Gene Ontology Biological Process
- activation of JUN kinase activity [TAS]
- androgen receptor signaling pathway [IDA]
- apoptotic process [TAS]
- chromatin remodeling [IDA]
- extrinsic apoptotic signaling pathway via death domain receptors [TAS]
- negative regulation of transcription, DNA-templated [IDA]
- nucleosome assembly [IDA]
- positive regulation of neuron death [IGI]
- positive regulation of protein kinase activity [IGI]
- positive regulation of protein phosphorylation [IGI]
- regulation of protein ubiquitination [IDA]
- regulation of transcription, DNA-templated [IDA]
Gene Ontology Molecular Function- androgen receptor binding [IPI]
- enzyme binding [IPI]
- heat shock protein binding [TAS]
- histone binding [IDA]
- p53 binding [IPI]
- protein N-terminus binding [IPI]
- protein binding [IPI]
- protein homodimerization activity [IDA]
- protein kinase activator activity [IGI]
- protein kinase binding [IPI]
- receptor signaling protein activity [TAS]
- transcription corepressor activity [IDA]
- transcription factor binding [IDA]
- ubiquitin protein ligase binding [IPI]
- androgen receptor binding [IPI]
- enzyme binding [IPI]
- heat shock protein binding [TAS]
- histone binding [IDA]
- p53 binding [IPI]
- protein N-terminus binding [IPI]
- protein binding [IPI]
- protein homodimerization activity [IDA]
- protein kinase activator activity [IGI]
- protein kinase binding [IPI]
- receptor signaling protein activity [TAS]
- transcription corepressor activity [IDA]
- transcription factor binding [IDA]
- ubiquitin protein ligase binding [IPI]
RPS16
Gene Ontology Biological Process
- RNA metabolic process [TAS]
- SRP-dependent cotranslational protein targeting to membrane [TAS]
- cellular protein metabolic process [TAS]
- gene expression [TAS]
- mRNA metabolic process [TAS]
- nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [TAS]
- rRNA processing [IMP]
- ribosomal small subunit biogenesis [IMP]
- translation [IC, NAS, TAS]
- translational elongation [TAS]
- translational initiation [TAS]
- translational termination [TAS]
- viral life cycle [TAS]
- viral process [TAS]
- viral transcription [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Quantitative Score
- 0.994678568 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex HCT HCT116 cells CompPASS score = 0.994678568, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HCT116.
- Only scores from within the same cell line in BioPlex HCT (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| RPS16 DAXX | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | 0.9912 | BioGRID | 3132209 |
Curated By
- BioGRID