SRR
Gene Ontology Biological Process
Gene Ontology Molecular Function- ATP binding [IDA, ISS]
- L-serine ammonia-lyase activity [IDA]
- PDZ domain binding [IPI]
- calcium ion binding [ISS]
- glycine binding [ISS]
- magnesium ion binding [IDA]
- protein homodimerization activity [IDA, IPI]
- pyridoxal phosphate binding [IDA, ISS]
- serine racemase activity [IDA]
- threonine racemase activity [ISS]
- ATP binding [IDA, ISS]
- L-serine ammonia-lyase activity [IDA]
- PDZ domain binding [IPI]
- calcium ion binding [ISS]
- glycine binding [ISS]
- magnesium ion binding [IDA]
- protein homodimerization activity [IDA, IPI]
- pyridoxal phosphate binding [IDA, ISS]
- serine racemase activity [IDA]
- threonine racemase activity [ISS]
Gene Ontology Cellular Component
RNF41
Gene Ontology Biological Process
- extrinsic apoptotic signaling pathway [IDA]
- negative regulation of cell migration [IMP]
- negative regulation of cell proliferation [IDA]
- positive regulation of reactive oxygen species metabolic process [IMP]
- proteasomal protein catabolic process [IDA]
- protein autoubiquitination [IDA]
- protein polyubiquitination [IDA]
- regulation of MAPK cascade [IDA]
- regulation of protein kinase B signaling [IDA]
- regulation of reactive oxygen species metabolic process [IMP]
Gene Ontology Molecular Function
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
The BioPlex Network of Human Protein Interactions: Additional Unpublished AP-MS Results (Pre-Publication)
As part of an ongoing effort led by Steve Gygi, Wade Harper, and Ed Huttlin in the Department of Cell Biology at Harvard Medical School, we are systematically profiling the interactions among human proteins using affinity purification mass spectrometry. In this effort, HA-tagged bait proteins obtained from the human ORFeome collection (version 8.1; Marc Vidal) are expressed individually in human ... [more]
Quantitative Score
- 0.999942939 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex HCT (unpublished interaction)
- BioPlex HCT HCT116 cells CompPASS score = 0.999942939010877, threshold = 0.362. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.362 threshold represents the top 2% of scores in HCT116.
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| RNF41 SRR | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | 1 | BioGRID | 3092813 | |
| SRR RNF41 | Two-hybrid Two-hybrid Bait protein expressed as a DNA binding domain (DBD) fusion and prey expressed as a transcriptional activation domain (TAD) fusion and interaction measured by reporter gene activation. | High | - | BioGRID | 2737939 |
Curated By
- BioGRID