BAIT
MET
AUTS9, HGFR, RCCP2, c-Met
MET proto-oncogene, receptor tyrosine kinase
GO Process (12)
GO Function (3)
GO Component (5)
Gene Ontology Biological Process
- axon guidance [TAS]
- branching morphogenesis of an epithelial tube [IMP]
- cell proliferation [TAS]
- cell surface receptor signaling pathway [NAS]
- endothelial cell morphogenesis [IDA]
- negative regulation of hydrogen peroxide-mediated programmed cell death [IMP]
- peptidyl-tyrosine phosphorylation [NAS, TAS]
- positive chemotaxis [IDA]
- positive regulation of endothelial cell chemotaxis [IMP]
- positive regulation of transcription from RNA polymerase II promoter [IDA]
- semaphorin-plexin signaling pathway [IDA]
- signal transduction [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
VHL
HRCA1, RCA1, VHL1, pVHL
von Hippel-Lindau tumor suppressor, E3 ubiquitin protein ligase
GO Process (13)
GO Function (5)
GO Component (6)
Gene Ontology Biological Process
- cell morphogenesis [NAS]
- cellular response to hypoxia [TAS]
- negative regulation of apoptotic process [NAS]
- negative regulation of cell proliferation [TAS]
- negative regulation of transcription from RNA polymerase II promoter [TAS]
- negative regulation of transcription from RNA polymerase II promoter in response to hypoxia [IDA]
- positive regulation of cell differentiation [NAS]
- positive regulation of transcription, DNA-templated [IMP]
- protein stabilization [NAS]
- protein ubiquitination [IDA, IMP]
- proteolysis [TAS]
- regulation of transcription from RNA polymerase II promoter in response to hypoxia [TAS]
- regulation of transcription, DNA-templated [IMP]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Negative Genetic
Mutations/deletions in separate genes, each of which alone causes a minimal phenotype, but when combined in the same cell results in a more severe fitness defect or lethality under a given condition. This term is reserved for high or low throughput studies with scores.
Publication
Combinatorial CRISPR screen identifies fitness effects of gene paralogues.
Genetic redundancy has evolved as a way for human cells to survive the loss of genes that are single copy and essential in other organisms, but also allows tumours to survive despite having highly rearranged genomes. In this study we CRISPR screen 1191 gene pairs, including paralogues and known and predicted synthetic lethal interactions to identify 105 gene combinations whose ... [more]
Nat Commun Dec. 26, 2020; 12(1);1302 [Pubmed: 33637726]
Throughput
- Low Throughput
Ontology Terms
- growth abnormality (HP:0001507) [viability (PATO:0000169)]
Additional Notes
- CRISPR GI screen
- Cell Line: RPE-1
- Experimental Setup: Timecourse
- GIST: A-phenotypic negative genetic interaction
- Library: Targeted CRISPR synthetic lethality library
- Significance Threshold:FDR<0.1 and additional filtering of gene pairs with one gene with a large individual fitness defect
Curated By
- BioGRID