BAIT
CDK5
cyclin-dependent kinase 5
GO Process (70)
GO Function (13)
GO Component (18)
Gene Ontology Biological Process
- Schwann cell development [ISO]
- apoptotic process [ISO]
- associative learning [ISO]
- axon extension [TAS]
- axonogenesis [ISO]
- behavioral response to cocaine [ISO]
- calcium ion import [ISO]
- cell migration [ISO]
- cell-matrix adhesion [ISO]
- central nervous system development [TAS]
- central nervous system neuron development [ISO]
- cerebellar cortex development [ISO]
- cerebellar cortex formation [ISO]
- cerebellum development [ISO]
- cerebral cortex development [ISO]
- corpus callosum development [ISO]
- cortical actin cytoskeleton organization [IMP]
- dendrite morphogenesis [ISO]
- exocytosis [IMP]
- forebrain development [ISO]
- hippocampus development [ISO]
- intracellular protein transport [ISO]
- layer formation in cerebral cortex [ISO]
- motor neuron axon guidance [ISO]
- negative regulation of axon extension [ISO]
- negative regulation of cell cycle [ISO]
- negative regulation of neuron death [ISO]
- negative regulation of protein export from nucleus [ISO]
- negative regulation of protein ubiquitination [ISO]
- negative regulation of proteolysis [ISO]
- negative regulation of synaptic plasticity [ISO]
- negative regulation of transcription, DNA-templated [ISO]
- neuron apoptotic process [IMP, ISO]
- neuron differentiation [IDA, ISO]
- neuron migration [ISO]
- neuron projection development [IMP]
- neuron projection morphogenesis [IMP]
- nucleocytoplasmic transport [IMP]
- oligodendrocyte differentiation [ISO]
- peptidyl-serine phosphorylation [IDA, ISO]
- peptidyl-threonine phosphorylation [ISO]
- phosphorylation [ISO]
- positive regulation of calcium ion-dependent exocytosis [ISO]
- positive regulation of neuron apoptotic process [IDA]
- positive regulation of protein binding [ISO]
- positive regulation of protein kinase activity [ISO]
- positive regulation of protein targeting to membrane [ISO]
- positive regulation of receptor activity [ISO]
- protein autophosphorylation [IDA]
- protein localization to synapse [ISO]
- protein phosphorylation [IDA, ISO]
- receptor catabolic process [ISO]
- receptor clustering [ISO]
- regulated secretory pathway [IMP]
- regulation of cell migration [ISO]
- regulation of dendritic spine morphogenesis [ISO, ISS]
- regulation of excitatory postsynaptic membrane potential [ISO]
- regulation of postsynaptic membrane potential [ISO]
- regulation of synaptic plasticity [IMP]
- response to cocaine [ISO]
- response to wounding [IMP]
- sensory perception of pain [ISO]
- serine phosphorylation of STAT3 protein [ISO]
- skeletal muscle tissue development [IEP, ISO, TAS]
- synapse assembly [ISO]
- synaptic transmission, dopaminergic [ISO]
- synaptic transmission, glutamatergic [ISO]
- synaptic vesicle endocytosis [IMP]
- telencephalon development [ISO]
- visual learning [ISO]
Gene Ontology Molecular Function- ErbB-2 class receptor binding [ISO, ISS]
- ErbB-3 class receptor binding [ISO, ISS]
- acetylcholine receptor activator activity [ISO, ISS]
- cyclin-dependent protein serine/threonine kinase activity [IDA]
- cytoskeletal protein binding [IPI]
- ephrin receptor binding [IPI]
- kinase activity [IDA]
- p53 binding [ISO]
- protein binding [IPI]
- protein kinase activity [IDA, ISO]
- protein kinase binding [IPI]
- protein serine/threonine kinase activity [IDA, ISO]
- tau-protein kinase activity [IDA]
- ErbB-2 class receptor binding [ISO, ISS]
- ErbB-3 class receptor binding [ISO, ISS]
- acetylcholine receptor activator activity [ISO, ISS]
- cyclin-dependent protein serine/threonine kinase activity [IDA]
- cytoskeletal protein binding [IPI]
- ephrin receptor binding [IPI]
- kinase activity [IDA]
- p53 binding [ISO]
- protein binding [IPI]
- protein kinase activity [IDA, ISO]
- protein kinase binding [IPI]
- protein serine/threonine kinase activity [IDA, ISO]
- tau-protein kinase activity [IDA]
Gene Ontology Cellular Component
- axon [IDA, ISO]
- cell [ISO]
- cell junction [TAS]
- cyclin-dependent protein kinase 5 holoenzyme complex [IDA]
- cytoplasm [IDA, ISO]
- cytoskeleton [IDA]
- cytosol [ISO]
- dendrite [IDA]
- filopodium [ISO]
- growth cone [IDA]
- intracellular [ISO]
- lamellipodium [ISO]
- membrane [IDA]
- neuromuscular junction [IDA]
- neuronal cell body [IDA]
- nucleolus [ISO]
- nucleus [IDA, ISO]
- postsynaptic density [IDA]
Rattus norvegicus
PREY
PARK2
Park, Prkn
parkin RBR E3 ubiquitin protein ligase
GO Process (63)
GO Function (22)
GO Component (22)
Gene Ontology Biological Process
- adult locomotory behavior [ISO, ISS]
- aggresome assembly [ISO, ISS]
- cellular protein catabolic process [ISO]
- cellular protein modification process [TAS]
- cellular response to toxic substance [ISO, ISS]
- dopamine metabolic process [ISO]
- dopamine uptake involved in synaptic transmission [ISO]
- learning [ISO]
- locomotory behavior [ISO]
- mitochondrial fission [ISS]
- mitochondrion degradation [ISO, ISS]
- mitochondrion organization [ISS]
- negative regulation of JNK cascade [ISS]
- negative regulation of actin filament bundle assembly [ISO]
- negative regulation of cell death [ISO]
- negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway [ISO, ISS]
- negative regulation of glucokinase activity [ISO, ISS]
- negative regulation of insulin secretion [ISO, ISS]
- negative regulation of mitochondrial fusion [ISS]
- negative regulation of neuron apoptotic process [ISO, ISS]
- negative regulation of neuron death [IGI, ISO]
- negative regulation of oxidative stress-induced neuron death [IGI]
- negative regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway [ISO, ISS]
- negative regulation of protein phosphorylation [ISO, ISS]
- negative regulation of reactive oxygen species metabolic process [ISO, ISS]
- negative regulation of release of cytochrome c from mitochondria [ISO, ISS]
- neuron cellular homeostasis [ISS]
- neuron maturation [IEP]
- norepinephrine metabolic process [ISO]
- positive regulation of DNA binding [ISO, ISS]
- positive regulation of I-kappaB kinase/NF-kappaB signaling [ISO, ISS]
- positive regulation of mitochondrial fission [ISS]
- positive regulation of mitochondrial fusion [ISO, ISS]
- positive regulation of proteasomal protein catabolic process [ISO]
- positive regulation of protein linear polyubiquitination [ISO]
- positive regulation of transcription from RNA polymerase II promoter [ISO, ISS]
- positive regulation of tumor necrosis factor-mediated signaling pathway [ISO, ISS]
- proteasome-mediated ubiquitin-dependent protein catabolic process [ISO, ISS]
- protein K48-linked ubiquitination [ISO, ISS]
- protein K63-linked ubiquitination [ISO, ISS]
- protein autoubiquitination [ISO, ISS]
- protein localization to mitochondrion [ISS]
- protein metabolic process [ISO]
- protein monoubiquitination [ISO, ISS]
- protein polyubiquitination [ISO, ISS]
- protein ubiquitination [ISO, ISS]
- protein ubiquitination involved in ubiquitin-dependent protein catabolic process [ISO, ISS]
- regulation of autophagy [ISO, ISS]
- regulation of cellular response to oxidative stress [ISS]
- regulation of mitochondrion organization [ISO, ISS]
- regulation of neurotransmitter secretion [ISO]
- regulation of reactive oxygen species metabolic process [ISO]
- regulation of synaptic transmission [ISO]
- response to corticosterone [IEP]
- response to drug [IEP]
- response to endoplasmic reticulum stress [ISO]
- response to oxidative stress [ISS]
- response to unfolded protein [IDA]
- startle response [ISO]
- synaptic transmission, dopaminergic [ISO]
- synaptic transmission, glutamatergic [ISO]
- ubiquitin-dependent protein catabolic process [TAS]
- zinc ion homeostasis [ISS]
Gene Ontology Molecular Function- F-box domain binding [ISO, ISS]
- G-protein coupled receptor binding [ISO, ISS]
- Hsp70 protein binding [ISO, ISS]
- PDZ domain binding [ISO, ISS]
- actin binding [ISO]
- chaperone binding [ISO]
- cullin family protein binding [ISO, ISS]
- heat shock protein binding [ISO]
- histone deacetylase binding [ISO]
- identical protein binding [ISO, ISS]
- kinase binding [ISO]
- protein binding [IPI]
- protein complex binding [IDA]
- protein kinase binding [ISO, ISS]
- transcription regulatory region sequence-specific DNA binding [ISS]
- tubulin binding [ISO]
- ubiquitin binding [ISO, ISS]
- ubiquitin conjugating enzyme binding [ISO, ISS]
- ubiquitin protein ligase activity [ISO]
- ubiquitin protein ligase binding [ISO]
- ubiquitin-protein transferase activity [ISO, ISS, TAS]
- ubiquitin-specific protease binding [ISO]
- F-box domain binding [ISO, ISS]
- G-protein coupled receptor binding [ISO, ISS]
- Hsp70 protein binding [ISO, ISS]
- PDZ domain binding [ISO, ISS]
- actin binding [ISO]
- chaperone binding [ISO]
- cullin family protein binding [ISO, ISS]
- heat shock protein binding [ISO]
- histone deacetylase binding [ISO]
- identical protein binding [ISO, ISS]
- kinase binding [ISO]
- protein binding [IPI]
- protein complex binding [IDA]
- protein kinase binding [ISO, ISS]
- transcription regulatory region sequence-specific DNA binding [ISS]
- tubulin binding [ISO]
- ubiquitin binding [ISO, ISS]
- ubiquitin conjugating enzyme binding [ISO, ISS]
- ubiquitin protein ligase activity [ISO]
- ubiquitin protein ligase binding [ISO]
- ubiquitin-protein transferase activity [ISO, ISS, TAS]
- ubiquitin-specific protease binding [ISO]
Gene Ontology Cellular Component
- Golgi apparatus [ISO]
- Golgi membrane [IDA]
- LUBAC complex [ISO, ISS]
- Parkin-FBXW7-Cul1 ubiquitin ligase complex [ISO, ISS]
- SCF ubiquitin ligase complex [ISO]
- aggresome [ISO, ISS]
- cytoplasm [IDA, ISO, ISS]
- cytoplasmic vesicle [IDA]
- cytosol [ISO, ISS]
- endoplasmic reticulum [IDA, ISO]
- endoplasmic reticulum membrane [IDA]
- intracellular [IDA]
- membrane raft [IDA]
- mitochondrion [ISO, ISS]
- neuron projection [ISO]
- nucleus [ISO]
- perinuclear region of cytoplasm [ISO]
- postsynaptic density [IDA]
- protein complex [ISO]
- synapse [IDA]
- synaptic vesicle [IDA]
- ubiquitin ligase complex [ISO, ISS]
Rattus norvegicus
Affinity Capture-Western
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins.
Publication
Phosphorylation of Parkin by the cyclin-dependent kinase 5 at the linker region modulates its ubiquitin-ligase activity and aggregation.
Mutations in Parkin are responsible for a large percentage of autosomal recessive juvenile parkinsonism cases. Parkin displays ubiquitin-ligase activity and protects against cell death promoted by several insults. Therefore, regulation of Parkin activities is important for understanding the dopaminergic cell death observed in Parkinson disease. We now report that cyclin-dependent kinase 5 (Cdk5) phosphorylates Parkin both in vitro and in ... [more]
J. Biol. Chem. Apr. 27, 2007; 282(17);12842-50 [Pubmed: 17327227]
Throughput
- Low Throughput
Curated By
- BioGRID