BAIT
CDKL5
BC038161, Stk9, RP23-213O8.2
cyclin-dependent kinase-like 5
GO Process (6)
GO Function (4)
GO Component (6)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Mus musculus
PREY
DLG3
Dlgh3, SAP102, mKIAA1232, RP23-142M12.1
discs, large homolog 3 (Drosophila)
GO Process (9)
GO Function (10)
GO Component (13)
Gene Ontology Biological Process
- embryo development [IBA]
- establishment of planar polarity [IMP]
- establishment or maintenance of epithelial cell apical/basal polarity [IMP]
- negative regulation of phosphatase activity [ISO]
- nervous system development [IBA]
- nucleotide phosphorylation [IBA]
- receptor clustering [IBA]
- receptor localization to synapse [IBA]
- synaptic transmission [IBA]
Gene Ontology Molecular Function- PDZ domain binding [ISO]
- guanylate kinase activity [IBA]
- ionotropic glutamate receptor binding [IBA, ISO]
- kinase binding [ISO]
- phosphatase binding [ISO]
- protein C-terminus binding [ISO]
- protein binding [IPI]
- protein domain specific binding [ISO]
- protein phosphatase binding [ISO]
- ubiquitin protein ligase binding [IPI]
- PDZ domain binding [ISO]
- guanylate kinase activity [IBA]
- ionotropic glutamate receptor binding [IBA, ISO]
- kinase binding [ISO]
- phosphatase binding [ISO]
- protein C-terminus binding [ISO]
- protein binding [IPI]
- protein domain specific binding [ISO]
- protein phosphatase binding [ISO]
- ubiquitin protein ligase binding [IPI]
Gene Ontology Cellular Component
- alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex [IDA]
- basolateral plasma membrane [IBA]
- cell-cell junction [IDA]
- cytoplasm [IDA]
- dendritic shaft [ISO]
- extracellular space [ISO]
- growth cone [ISO]
- neuronal cell body [ISO]
- plasma membrane [IDA]
- postsynaptic density [IBA, ISO]
- postsynaptic membrane [IBA]
- synapse [ISO]
- tight junction [IDA]
Mus musculus
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies.
There are hundreds of risk genes associated with autism spectrum disorder (ASD), but signaling networks at the protein level remain unexplored. We use neuron-specific proximity-labeling proteomics (BioID2) to identify protein-protein interaction (PPI) networks for 41 ASD risk genes. Neuron-specific PPI networks, including synaptic transmission proteins, are disrupted by de novo missense variants. The PPI network map reveals convergent pathways, including ... [more]
Cell Rep Nov. 22, 2022; 41(8);111678 [Pubmed: 36417873]
Quantitative Score
- 0.393862915 [Relative Biotinylation Score]
Throughput
- High Throughput
Additional Notes
- BioID experiment
- The scores are relative biotinylation enrichment scores (calculated as a percentage of the abundance fold change of the highest biotinylated prey protein)
- The statistical cut-offs for the prey proteins are based on adjusted t-test p-value and significance B scores of less than 0.05, by comparing average abundances of prey proteins between the Bait-BioID samples and the luciferase-BioID control
Curated By
- BioGRID