BAIT
CNTNAP2
5430425M22Rik, Caspr2, mKIAA0868
contactin associated protein-like 2
GO Process (10)
GO Function (3)
GO Component (8)
Gene Ontology Biological Process
- adult behavior [ISO]
- cell adhesion [TAS]
- cellular protein localization [IMP]
- clustering of voltage-gated potassium channels [IMP]
- learning [ISO]
- neuron projection development [IGI]
- neuron recognition [TAS]
- protein localization to juxtaparanode region of axon [IMP]
- social behavior [ISO]
- vocalization behavior [ISO]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Mus musculus
PREY
HDAC2
D10Wsu179e, YAF1, Yy1bp, mRPD3
histone deacetylase 2
GO Process (43)
GO Function (18)
GO Component (13)
Gene Ontology Biological Process
- ATP-dependent chromatin remodeling [ISO]
- cardiac muscle cell development [IMP]
- cellular response to hydrogen peroxide [ISO]
- chromatin modification [TAS]
- circadian regulation of gene expression [IDA]
- dendrite development [IMP]
- embryonic digit morphogenesis [IGI]
- epidermal cell differentiation [IGI]
- eyelid development in camera-type eye [IGI]
- fungiform papilla formation [IGI]
- hair follicle placode formation [IGI]
- hippocampus development [IGI]
- histone H3 deacetylation [IDA, ISO]
- histone H4 deacetylation [IDA]
- histone deacetylation [IGI, ISO, TAS]
- maintenance of chromatin silencing [ISO]
- negative regulation of DNA binding [ISO]
- negative regulation of apoptotic process [IGI]
- negative regulation of canonical Wnt signaling pathway [IGI]
- negative regulation of cardiac muscle cell proliferation [IMP]
- negative regulation of dendritic spine development [ISO]
- negative regulation of intrinsic apoptotic signaling pathway [IGI]
- negative regulation of neuron projection development [IDA, ISO]
- negative regulation of peptidyl-lysine acetylation [ISO]
- negative regulation of sequence-specific DNA binding transcription factor activity [ISO]
- negative regulation of transcription from RNA polymerase II promoter [IGI, ISO]
- negative regulation of transcription, DNA-templated [IDA, ISO]
- neuron differentiation [IGI]
- odontogenesis of dentin-containing tooth [IGI]
- positive regulation of cell proliferation [IGI, ISO]
- positive regulation of epithelial to mesenchymal transition [ISO]
- positive regulation of interleukin-1 production [ISO]
- positive regulation of oligodendrocyte differentiation [IGI, ISO]
- positive regulation of proteolysis [ISO]
- positive regulation of receptor biosynthetic process [ISO]
- positive regulation of sequence-specific DNA binding transcription factor activity [IDA]
- positive regulation of transcription from RNA polymerase II promoter [ISO]
- positive regulation of tumor necrosis factor production [ISO]
- positive regulation of tyrosine phosphorylation of Stat3 protein [ISO]
- protein deacetylation [IDA]
- regulation of protein deacetylation [IGI]
- regulation of protein kinase B signaling [IMP]
- regulation of sarcomere organization [IMP]
Gene Ontology Molecular Function- Krueppel-associated box domain binding [IPI]
- RNA polymerase II core promoter proximal region sequence-specific DNA binding [ISO]
- RNA polymerase II distal enhancer sequence-specific DNA binding [ISO]
- RNA polymerase II repressing transcription factor binding [ISO]
- chromatin DNA binding [IDA]
- chromatin binding [IDA]
- core promoter binding [ISO]
- deacetylase activity [IDA]
- enzyme binding [IPI, ISO]
- heat shock protein binding [ISO]
- histone deacetylase activity [IDA, ISO, TAS]
- nucleosomal DNA binding [ISO]
- poly(A) RNA binding [ISO]
- protein binding [IPI]
- protein deacetylase activity [IDA, ISO]
- sequence-specific DNA binding [ISO]
- sequence-specific DNA binding transcription factor activity [IDA]
- transcription factor binding [ISO, TAS]
- Krueppel-associated box domain binding [IPI]
- RNA polymerase II core promoter proximal region sequence-specific DNA binding [ISO]
- RNA polymerase II distal enhancer sequence-specific DNA binding [ISO]
- RNA polymerase II repressing transcription factor binding [ISO]
- chromatin DNA binding [IDA]
- chromatin binding [IDA]
- core promoter binding [ISO]
- deacetylase activity [IDA]
- enzyme binding [IPI, ISO]
- heat shock protein binding [ISO]
- histone deacetylase activity [IDA, ISO, TAS]
- nucleosomal DNA binding [ISO]
- poly(A) RNA binding [ISO]
- protein binding [IPI]
- protein deacetylase activity [IDA, ISO]
- sequence-specific DNA binding [ISO]
- sequence-specific DNA binding transcription factor activity [IDA]
- transcription factor binding [ISO, TAS]
Gene Ontology Cellular Component
- ESC/E(Z) complex [ISO]
- NuRD complex [ISO]
- Sin3 complex [ISO]
- chromatin [ISO]
- cytoplasm [ISO, TAS]
- heterochromatin [IDA]
- histone deacetylase complex [TAS]
- nuclear chromatin [IDA, ISO]
- nucleus [IDA, ISO]
- protein complex [ISO]
- replication fork [IDA]
- transcription factor complex [IPI]
- transcriptional repressor complex [IPI]
Mus musculus
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies.
There are hundreds of risk genes associated with autism spectrum disorder (ASD), but signaling networks at the protein level remain unexplored. We use neuron-specific proximity-labeling proteomics (BioID2) to identify protein-protein interaction (PPI) networks for 41 ASD risk genes. Neuron-specific PPI networks, including synaptic transmission proteins, are disrupted by de novo missense variants. The PPI network map reveals convergent pathways, including ... [more]
Cell Rep Nov. 22, 2022; 41(8);111678 [Pubmed: 36417873]
Quantitative Score
- 0.116612527 [Relative Biotinylation Score]
Throughput
- High Throughput
Additional Notes
- BioID experiment
- The scores are relative biotinylation enrichment scores (calculated as a percentage of the abundance fold change of the highest biotinylated prey protein)
- The statistical cut-offs for the prey proteins are based on adjusted t-test p-value and significance B scores of less than 0.05, by comparing average abundances of prey proteins between the Bait-BioID samples and the luciferase-BioID control
Curated By
- BioGRID