BAIT
PPP5C
AU020526, PP5
protein phosphatase 5, catalytic subunit
GO Process (12)
GO Function (8)
GO Component (10)
Gene Ontology Biological Process
- dephosphorylation [IMP]
- histone dephosphorylation [ISO]
- negative regulation of cell death [ISO]
- negative regulation of neuron death [ISO]
- negative regulation of protein phosphorylation [ISO]
- positive regulation of I-kappaB kinase/NF-kappaB signaling [ISO]
- positive regulation of glucocorticoid receptor signaling pathway [ISO]
- protein dephosphorylation [ISO]
- protein heterooligomerization [ISO]
- protein oligomerization [ISO]
- response to morphine [IMP]
- signal transduction [ISO]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Mus musculus
PREY
CAMK2D
2810011D23Rik, 8030469K03Rik, CaMK II, [d]-CaMKII
calcium/calmodulin-dependent protein kinase II, delta
GO Process (30)
GO Function (9)
GO Component (14)
Gene Ontology Biological Process
- G1/S transition of mitotic cell cycle [IMP]
- calcium ion transport [IDA, IMP]
- cardiac muscle cell contraction [ISO, ISS]
- cardiac muscle contraction [IDA]
- cell growth involved in cardiac muscle cell development [ISO]
- cellular potassium ion homeostasis [ISO]
- endoplasmic reticulum calcium ion homeostasis [ISO]
- negative regulation of sodium ion transmembrane transport [ISO]
- negative regulation of sodium ion transmembrane transporter activity [ISO]
- peptidyl-serine phosphorylation [IDA, ISO]
- peptidyl-threonine phosphorylation [ISO, ISS]
- positive regulation of ERK1 and ERK2 cascade [ISO]
- positive regulation of Rac protein signal transduction [ISO]
- positive regulation of cardiac muscle hypertrophy [ISO]
- positive regulation of smooth muscle cell migration [ISO]
- positive regulation of smooth muscle cell proliferation [ISO]
- protein autophosphorylation [IMP, ISO]
- protein oligomerization [ISO]
- protein phosphorylation [ISO]
- regulation of G2/M transition of mitotic cell cycle [ISO]
- regulation of cardiac muscle cell action potential [ISO]
- regulation of cell communication by electrical coupling [ISO]
- regulation of cellular localization [ISO]
- regulation of generation of L-type calcium current [ISO]
- regulation of membrane depolarization [ISO]
- regulation of relaxation of cardiac muscle [IGI, ISO]
- regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum [ISO]
- regulation of sodium ion transport [IDA]
- relaxation of cardiac muscle [ISO, ISS]
- response to hypoxia [ISO]
Gene Ontology Molecular Function- calmodulin binding [ISO]
- calmodulin-dependent protein kinase activity [ISO, ISS]
- ion channel binding [IPI, ISO]
- nitric-oxide synthase binding [ISO]
- protein binding [IPI]
- protein homodimerization activity [ISO]
- protein serine/threonine kinase activity [IDA, IMP, ISO]
- sodium channel inhibitor activity [ISO]
- titin binding [ISO]
- calmodulin binding [ISO]
- calmodulin-dependent protein kinase activity [ISO, ISS]
- ion channel binding [IPI, ISO]
- nitric-oxide synthase binding [ISO]
- protein binding [IPI]
- protein homodimerization activity [ISO]
- protein serine/threonine kinase activity [IDA, IMP, ISO]
- sodium channel inhibitor activity [ISO]
- titin binding [ISO]
Gene Ontology Cellular Component
- T-tubule [IDA]
- axon initial segment [IDA]
- calcium channel complex [IDA, ISO]
- cytoplasm [IDA, ISO]
- cytosol [ISO]
- endoplasmic reticulum [ISO]
- intercalated disc [IDA]
- membrane [ISO]
- neuromuscular junction [IDA]
- neuronal cell body [IDA]
- nucleus [IDA, ISO]
- perinuclear region of cytoplasm [ISO]
- protein complex [ISO]
- sarcoplasmic reticulum [IDA]
Mus musculus
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies.
There are hundreds of risk genes associated with autism spectrum disorder (ASD), but signaling networks at the protein level remain unexplored. We use neuron-specific proximity-labeling proteomics (BioID2) to identify protein-protein interaction (PPI) networks for 41 ASD risk genes. Neuron-specific PPI networks, including synaptic transmission proteins, are disrupted by de novo missense variants. The PPI network map reveals convergent pathways, including ... [more]
Cell Rep Nov. 22, 2022; 41(8);111678 [Pubmed: 36417873]
Quantitative Score
- 0.241966314 [Relative Biotinylation Score]
Throughput
- High Throughput
Additional Notes
- BioID experiment
- The scores are relative biotinylation enrichment scores (calculated as a percentage of the abundance fold change of the highest biotinylated prey protein)
- The statistical cut-offs for the prey proteins are based on adjusted t-test p-value and significance B scores of less than 0.05, by comparing average abundances of prey proteins between the Bait-BioID samples and the luciferase-BioID control
Curated By
- BioGRID