BAIT
USP15
4921514G19Rik, AI327321, E430033I05Rik, Gcap18
ubiquitin specific peptidase 15
GO Process (9)
GO Function (7)
GO Component (2)
Gene Ontology Biological Process
- BMP signaling pathway [ISO]
- histone H2B conserved C-terminal lysine deubiquitination [ISO]
- monoubiquitinated protein deubiquitination [ISO]
- pathway-restricted SMAD protein phosphorylation [ISO]
- proteasome-mediated ubiquitin-dependent protein catabolic process [IBA]
- protein deubiquitination [IBA, ISO]
- proteolysis [ISO]
- regulation of proteasomal protein catabolic process [IBA]
- transforming growth factor beta receptor signaling pathway [ISO]
Gene Ontology Molecular Function
Mus musculus
PREY
MYH10
5730504C04Rik, 9330167F11Rik, Fltn, Myhn-2, Myhn2, NMHC II-B, NMHC-B, NMHCII-B, NMMHC II-b, NMMHC-B, NMMHC-IIB, SMemb, mKIAA3005, RP23-396M19.2
myosin, heavy polypeptide 10, non-muscle
GO Process (27)
GO Function (6)
GO Component (21)
Gene Ontology Biological Process
- ATP catabolic process [ISO]
- actin cytoskeleton organization [IGI]
- actin filament-based movement [ISO]
- actomyosin structure organization [ISO]
- adult heart development [IMP]
- axon guidance [IMP]
- axonogenesis [IMP]
- brain development [IMP]
- cardiac myofibril assembly [IMP]
- cell proliferation [IMP]
- cerebellar Purkinje cell layer development [IMP]
- exocytosis [IMP]
- fourth ventricle development [IMP]
- in utero embryonic development [IMP]
- lateral ventricle development [IMP]
- mitotic cytokinesis [IMP, ISO]
- myofibril assembly [IMP]
- neuromuscular process controlling balance [IMP]
- neuron migration [IMP]
- neuron projection development [IMP]
- nuclear migration [IMP]
- plasma membrane repair [IMP]
- regulation of cell shape [IMP]
- retina development in camera-type eye [IMP]
- substrate-dependent cell migration, cell extension [IMP]
- third ventricle development [IMP]
- ventricular cardiac muscle cell development [IMP]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
- actin cytoskeleton [ISO]
- actomyosin [ISO]
- axon [IDA]
- cell cortex [IDA, ISO]
- cleavage furrow [ISO]
- cytoplasm [IDA, ISO]
- dendritic spine [IDA]
- extracellular vesicular exosome [ISO]
- growth cone [IDA]
- midbody [ISO]
- mitochondrion [ISO]
- myosin II complex [IDA, ISO]
- myosin II filament [ISO]
- myosin complex [IDA]
- neuromuscular junction [IDA]
- neuron projection [IDA]
- neuronal cell body [IDA]
- nucleus [ISO]
- plasma membrane [IDA]
- spindle [IDA]
- stress fiber [IDA, IMP, ISO]
Mus musculus
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
Neuron-specific protein network mapping of autism risk genes identifies shared biological mechanisms and disease-relevant pathologies.
There are hundreds of risk genes associated with autism spectrum disorder (ASD), but signaling networks at the protein level remain unexplored. We use neuron-specific proximity-labeling proteomics (BioID2) to identify protein-protein interaction (PPI) networks for 41 ASD risk genes. Neuron-specific PPI networks, including synaptic transmission proteins, are disrupted by de novo missense variants. The PPI network map reveals convergent pathways, including ... [more]
Cell Rep Nov. 22, 2022; 41(8);111678 [Pubmed: 36417873]
Quantitative Score
- 0.243822375 [Relative Biotinylation Score]
Throughput
- High Throughput
Additional Notes
- BioID experiment
- The scores are relative biotinylation enrichment scores (calculated as a percentage of the abundance fold change of the highest biotinylated prey protein)
- The statistical cut-offs for the prey proteins are based on adjusted t-test p-value and significance B scores of less than 0.05, by comparing average abundances of prey proteins between the Bait-BioID samples and the luciferase-BioID control
Curated By
- BioGRID