Proximity Label-MS

An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.

Publication

The in vivo Interaction Landscape of Histones H3.1 and H3.3.

Siddaway R, Milos S, Coyaud E, Yun HY, Morcos SM, Pajovic S, Campos EI, Raught B, Hawkins C

Chromatin structure, transcription, DNA replication, and repair are regulated via locus-specific incorporation of histone variants and posttranslational modifications that guide effector chromatin-binding proteins. Here we report unbiased, quantitative interactomes for the replication-coupled (H3.1) and replication-independent (H3.3) histone H3 variants based on BioID proximity labeling, which allows interactions in intact, living cells to be detected. Along with a significant proportion of ... [more]

Mol Cell Proteomics Oct. 01, 2022; 21(10);100411 [Pubmed: 36089195]

Throughput

  • High Throughput

Additional Notes

  • BioID
  • FDR less than or equal to 1%

Related interactions

InteractionExperimental Evidence CodeDatasetThroughputScoreCurated ByNotes
SUV39H1 H3F3A
Biochemical Activity
Biochemical Activity

An interaction is inferred from the biochemical effect of one protein upon another, for example, GTP-GDP exchange activity or phosphorylation of a substrate by a kinase. The bait protein executes the activity on the substrate hit protein. A Modification value is recorded for interactions of this type with the possible values Phosphorylation, Ubiquitination, Sumoylation, Dephosphorylation, Methylation, Prenylation, Acetylation, Deubiquitination, Proteolytic Processing, Glucosylation, Nedd(Rub1)ylation, Deacetylation, No Modification, Demethylation.

Low-BioGRID
1112931

Curated By

  • BioGRID