HMGB2
Gene Ontology Biological Process
- DNA ligation involved in DNA repair [ISS]
- DNA topological change [ISS]
- V(D)J recombination [ISS]
- apoptotic DNA fragmentation [TAS]
- apoptotic process [TAS]
- base-excision repair, DNA ligation [IDA]
- cell chemotaxis [IDA]
- cellular component disassembly involved in execution phase of apoptosis [TAS]
- cellular response to lipopolysaccharide [IEP]
- chromatin organization [NAS]
- chromatin remodeling [IBA]
- negative regulation of transcription, DNA-templated [IDA]
- nucleosome assembly [NAS]
- positive chemotaxis [IDA]
- positive regulation of DNA binding [IDA]
- positive regulation of endothelial cell proliferation [IDA]
- positive regulation of erythrocyte differentiation [IMP]
- positive regulation of megakaryocyte differentiation [IMP]
- positive regulation of nuclease activity [IDA]
- positive regulation of transcription from RNA polymerase II promoter [IDA]
- positive regulation of transcription, DNA-templated [IDA]
- regulation of transcription from RNA polymerase II promoter [IDA]
Gene Ontology Molecular Function- DNA binding [IMP]
- DNA binding, bending [IDA]
- RAGE receptor binding [IGI]
- chemoattractant activity [IDA]
- chromatin binding [IBA]
- damaged DNA binding [IDA]
- double-stranded DNA binding [ISS]
- poly(A) RNA binding [IDA]
- protein binding [IPI]
- sequence-specific DNA binding transcription factor activity [IDA]
- single-stranded DNA binding [ISS]
- transcription regulatory region DNA binding [IDA]
- DNA binding [IMP]
- DNA binding, bending [IDA]
- RAGE receptor binding [IGI]
- chemoattractant activity [IDA]
- chromatin binding [IBA]
- damaged DNA binding [IDA]
- double-stranded DNA binding [ISS]
- poly(A) RNA binding [IDA]
- protein binding [IPI]
- sequence-specific DNA binding transcription factor activity [IDA]
- single-stranded DNA binding [ISS]
- transcription regulatory region DNA binding [IDA]
Gene Ontology Cellular Component
RPS16
Gene Ontology Biological Process
- RNA metabolic process [TAS]
- SRP-dependent cotranslational protein targeting to membrane [TAS]
- cellular protein metabolic process [TAS]
- gene expression [TAS]
- mRNA metabolic process [TAS]
- nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [TAS]
- rRNA processing [IMP]
- ribosomal small subunit biogenesis [IMP]
- translation [IC, NAS, TAS]
- translational elongation [TAS]
- translational initiation [TAS]
- translational termination [TAS]
- viral life cycle [TAS]
- viral process [TAS]
- viral transcription [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Cross-Linking-MS (XL-MS)
An interaction is detected between two proteins using chemically reactive or photo-activatable cross-linking reagents that covalently link amino acids in close proximity, followed by mass spectrometry analysis to identify the linked peptides (reviewed in PMID 37406423, 37104977). Experiments may be carried with live cells or cell lysates in which all proteins are expressed at endogenous levels (e.g. PMID 34349018, 35235311) or with recombinant proteins (e.g., PMID 28537071).
Publication
Exploring an Alternative Cysteine-Reactive Chemistry to Enable Proteome-Wide PPI Analysis by Cross-Linking Mass Spectrometry.
The development of MS-cleavable cross-linking mass spectrometry (XL-MS) has enabled the effective capture and identification of endogenous protein-protein interactions (PPIs) and their residue contacts at the global scale without cell engineering. So far, only lysine-reactive cross-linkers have been successfully applied for proteome-wide PPI profiling. However, lysine cross-linkers alone cannot uncover the complete PPI map in cells. Previously, we have developed ... [more]
Throughput
- High Throughput
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| HMGB2 RPS16 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | - | BioGRID | 3358038 |
Curated By
- BioGRID