BAIT
HNRNPD
Auf1, Hnrpd
heterogeneous nuclear ribonucleoprotein D
GO Process (5)
GO Function (4)
GO Component (4)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Mus musculus
PREY
ARL6
1110018H24Rik, 2210411E14Rik, BBS3
ADP-ribosylation factor-like 6
GO Process (11)
GO Function (2)
GO Component (6)
Gene Ontology Biological Process
- Ras protein signal transduction [ISS]
- Wnt signaling pathway [ISO]
- brain development [IMP]
- cilium assembly [IMP, ISO]
- intermembrane transport [IMP]
- protein ADP-ribosylation [ISS]
- protein localization to ciliary membrane [ISO]
- protein localization to cilium [ISO]
- protein localization to nonmotile primary cilium [IDA]
- regulation of smoothened signaling pathway [IMP]
- retina layer formation [IMP]
Gene Ontology Molecular Function
Mus musculus
Affinity Capture-RNA
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and associated RNA species identified by Northern blot, RT-PCR, affinity labeling, sequencing, or microarray analysis.
Publication
Short-lived AUF1 p42-binding mRNAs of RANKL and BCL6 have two distinct instability elements each.
Regulation of mRNA stability by RNA-protein interactions contributes significantly to quantitative aspects of gene expression. We have identified potential mRNA targets of the AU-rich element binding protein AUF1. Myc-tagged AUF1 p42 was induced in mouse NIH/3T3 cells and RNA-protein complexes isolated using anti-myc tag antibody beads. Bound mRNAs were analyzed with Affymetrix microarrays. We have identified 508 potential target mRNAs ... [more]
PLoS ONE Nov. 13, 2018; 13(11);e0206823 [Pubmed: 30418981]
Throughput
- High Throughput
Curated By
- BioGRID