BAIT
HNRNPD
Auf1, Hnrpd
heterogeneous nuclear ribonucleoprotein D
GO Process (5)
GO Function (4)
GO Component (4)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Mus musculus
PREY
ALDH1A1
Ahd-2, Ahd2, Aldh1, Aldh1a2, E1, Raldh1
aldehyde dehydrogenase family 1, subfamily A1
GO Process (13)
GO Function (5)
GO Component (3)
Gene Ontology Biological Process
- 9-cis-retinoic acid biosynthetic process [IDA]
- 9-cis-retinoic acid metabolic process [ISO]
- embryonic eye morphogenesis [IGI]
- optic cup morphogenesis involved in camera-type eye development [IGI]
- oxidation-reduction process [IBA]
- positive regulation of apoptotic process [IGI]
- protein homotetramerization [ISO]
- response to drug [IDA]
- response to ethanol [ISO]
- response to oxidative stress [ISO]
- retinoic acid biosynthetic process [ISO]
- retinoic acid metabolic process [IDA, IGI, IMP]
- retinol metabolic process [IMP]
Gene Ontology Molecular Function
Mus musculus
Affinity Capture-RNA
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and associated RNA species identified by Northern blot, RT-PCR, affinity labeling, sequencing, or microarray analysis.
Publication
Short-lived AUF1 p42-binding mRNAs of RANKL and BCL6 have two distinct instability elements each.
Regulation of mRNA stability by RNA-protein interactions contributes significantly to quantitative aspects of gene expression. We have identified potential mRNA targets of the AU-rich element binding protein AUF1. Myc-tagged AUF1 p42 was induced in mouse NIH/3T3 cells and RNA-protein complexes isolated using anti-myc tag antibody beads. Bound mRNAs were analyzed with Affymetrix microarrays. We have identified 508 potential target mRNAs ... [more]
PLoS ONE Nov. 13, 2018; 13(11);e0206823 [Pubmed: 30418981]
Throughput
- High Throughput
Curated By
- BioGRID