BAIT

HDA6

ATHDA6, AXE1, HISTONE DEACETYLASE 6, MDC12.7, MDC12_7, RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, RPD3B, RTS1, SIL1, AT5G63110
RPD3-like histone deacetylase
Arabidopsis thaliana (Columbia)
PREY

FLD

FLOWERING LOCUS D, AT3G10390
lysine-specific histone demethylase 1 homolog 3
GO Process (3)
GO Function (1)
GO Component (1)
Arabidopsis thaliana (Columbia)

PCA

A Protein-Fragment Complementation Assay (PCA) is a protein-protein interaction assay in which a bait protein is expressed as fusion to one of the either N- or C- terminal peptide fragments of a reporter protein and prey protein is expressed as fusion to the complementary N- or C- terminal fragment of the same reporter protein. Interaction of bait and prey proteins bring together complementary fragments, which can then fold into an active reporter, e.g. the split-ubiquitin assay.

Publication

HDA6 interacts with FLD and regulates flowering in Arabidopsis.

Yu CW, Liu X, Luo M, Chen C, Lin X, Tian G, Lu Q, Cui Y, Wu K

Histone acetylation and deacetylation play an important role in epigenetic controls of gene expression. HDA6 is a RPD3-type histone deacetylase and the hda6 mutant axe1-5 displayed a late flowering phenotype. axe1-5/flc-3 double mutants flowered earlier than axe1-5 plants, indicating that the late-flowering phenotype of axe1-5 was FLC dependent. Bimolecular fluorescence complementation, in vitro pull down and co-immunoprecipitation assays revealed the ... [more]

Unknown Mar. 10, 2011; 0(0); [Pubmed: 21398257]

Throughput

  • Low Throughput

Related interactions

InteractionExperimental Evidence CodeDatasetThroughputScoreCurated ByNotes
FLD HDA6
Affinity Capture-Western
Affinity Capture-Western

An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins.

Low-BioGRID
-
HDA6 FLD
Reconstituted Complex
Reconstituted Complex

An interaction is detected between purified proteins in vitro.

Low-BioGRID
-
HDA6 FLD
Two-hybrid
Two-hybrid

Bait protein expressed as a DNA binding domain (DBD) fusion and prey expressed as a transcriptional activation domain (TAD) fusion and interaction measured by reporter gene activation.

Low-BioGRID
-

Curated By

  • BioGRID