TRIM71
Gene Ontology Biological Process
- G1/S transition of mitotic cell cycle [IMP]
- cellular response to organic substance [IDA]
- fibroblast growth factor receptor signaling pathway [IMP]
- miRNA metabolic process [IDA]
- negative regulation of translation involved in gene silencing by miRNA [IMP]
- neural tube closure [IMP]
- neural tube development [IDA]
- positive regulation of gene silencing by miRNA [IDA, IMP]
- protein autoubiquitination [IDA]
- regulation of gene silencing by miRNA [IGI, IMP]
- regulation of neural precursor cell proliferation [IMP]
- regulation of protein metabolic process [IDA]
- stem cell proliferation [IMP]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
AGO2
Gene Ontology Biological Process
- RNA phosphodiester bond hydrolysis, endonucleolytic [IDA, ISO]
- gene silencing by RNA [IMP]
- mRNA cleavage [IMP]
- mRNA cleavage involved in gene silencing by miRNA [ISO]
- miRNA metabolic process [IDA]
- negative regulation of translation involved in gene silencing by miRNA [ISO]
- negative regulation of translational initiation [ISO]
- positive regulation of gene expression [IMP]
- positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [IMP]
- positive regulation of nuclear-transcribed mRNA poly(A) tail shortening [IMP]
- post-embryonic development [IMP]
- pre-miRNA processing [ISO]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Biochemical Activity (Ubiquitination)
An interaction is inferred from the biochemical effect of one protein upon another, for example, GTP-GDP exchange activity or phosphorylation of a substrate by a kinase. The bait protein executes the activity on the substrate hit protein. A Modification value is recorded for interactions of this type with the possible values Phosphorylation, Ubiquitination, Sumoylation, Dephosphorylation, Methylation, Prenylation, Acetylation, Deubiquitination, Proteolytic Processing, Glucosylation, Nedd(Rub1)ylation, Deacetylation, No Modification, Demethylation.
Publication
The let-7 target gene mouse lin-41 is a stem cell specific E3 ubiquitin ligase for the miRNA pathway protein Ago2.
The let-7 miRNA and its target gene Lin-28 interact in a regulatory circuit controlling pluripotency. We investigated an additional let-7 target, mLin41 (mouse homologue of lin-41), as a potential contributor to this circuit. We demonstrate the presence of mLin41 protein in several stem cell niches, including the embryonic ectoderm, epidermis and male germ line. mLin41 colocalized to cytoplasmic foci with ... [more]
Throughput
- Low Throughput
Additional Notes
- in the presence of E1 and UbcH5a
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| TRIM71 AGO2 | Affinity Capture-Western Affinity Capture-Western An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins. | Low | - | BioGRID | - | |
| AGO2 TRIM71 | Affinity Capture-Western Affinity Capture-Western An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins. | Low | - | BioGRID | - | |
| TRIM71 AGO2 | Co-localization Co-localization Interaction inferred from two proteins that co-localize in the cell by indirect immunofluorescence only when in addition, if one gene is deleted, the other protein becomes mis-localized. Also includes co-dependent association of proteins with promoter DNA in chromatin immunoprecipitation experiments. | Low | - | BioGRID | - |
Curated By
- BioGRID