BAIT

HNRNPC

C1, C2, HNRNP, HNRPC, SNRPC

heterogeneous nuclear ribonucleoprotein C (C1/C2)

GO Process (6)

GO Function (9)

GO Component (9)

Gene Ontology Biological Process

3'-UTR-mediated mRNA stabilization [IMP]

ATP-dependent chromatin remodeling [IDA]

RNA splicing [TAS]

gene expression [TAS]

mRNA splicing, via spliceosome [IC, TAS]

osteoblast differentiation [IDA]

Gene Ontology Molecular Function

RNA binding [NAS]
RNA polymerase II core promoter proximal region sequence-specific DNA binding [IDA]
RNA polymerase II distal enhancer sequence-specific DNA binding [IDA]
identical protein binding [IPI]
mRNA 3'-UTR binding [IDA]
nucleosomal DNA binding [IDA]
poly(A) RNA binding [IDA]
poly(U) RNA binding [IDA]
protein binding [IPI]

Gene Ontology Cellular Component

catalytic step 2 spliceosome [IDA]

extracellular vesicular exosome [IDA]

nuclear chromatin [IDA]

nucleoplasm [IDA, TAS]

protein complex [IDA]

spliceosomal complex [IDA]

CRISPR Database HGNC Alliance of Genome Resources OMIM Entrez Gene RefSeq UniprotKB Ensembl

Homo sapiens

PREY

KHDRBS3

Etle, SALP, SLM-2, SLM2, T-STAR, TSTAR, etoile

KH domain containing, RNA binding, signal transduction associated 3

GO Process (1)

GO Function (3)

GO Component (2)

Gene Ontology Biological Process

spermatogenesis [TAS]

Gene Ontology Molecular Function

RNA binding [IDA]
poly(A) RNA binding [IDA]
protein binding [IPI]

Gene Ontology Cellular Component

nucleoplasm [IDA]

CRISPR Database OMIM HGNC Alliance of Genome Resources Entrez Gene RefSeq UniprotKB Ensembl

Homo sapiens

Two-hybrid

Bait protein expressed as a DNA binding domain (DBD) fusion and prey expressed as a transcriptional activation domain (TAD) fusion and interaction measured by reporter gene activation.

Publication

Shifted Transversal Design smart-pooling for high coverage interactome mapping.

Xin X, Rual JF, Hirozane-Kishikawa T, Hill DE, Vidal M, Boone C, Thierry-Mieg N

"Smart-pooling," in which test reagents are multiplexed in a highly redundant manner, is a promising strategy for achieving high efficiency, sensitivity, and specificity in systems-level projects. However, previous applications relied on low redundancy designs that do not leverage the full potential of smart-pooling, and more powerful theoretical constructions, such as the Shifted Transversal Design (STD), lack experimental validation. Here we ... [more]

Genome Res. Jul. 01, 2009; 19(7);1262-9 [Pubmed: 19447967]

Throughput

High Throughput

Curated By

BioGRID