BAIT
RC3H1
RNF198, ROQUIN, RP5-1198E17.5
ring finger and CCCH-type domains 1
GO Process (11)
GO Function (3)
GO Component (2)
Gene Ontology Biological Process
- cytoplasmic mRNA processing body assembly [ISS]
- negative regulation of B cell proliferation [ISS]
- negative regulation of T-helper cell differentiation [ISS]
- negative regulation of activated T cell proliferation [ISS]
- negative regulation of germinal center formation [ISS]
- nuclear-transcribed mRNA catabolic process [ISS]
- posttranscriptional regulation of gene expression [ISS]
- protein ubiquitination [TAS]
- regulation of T cell receptor signaling pathway [ISS]
- regulation of germinal center formation [ISS]
- regulation of mRNA stability [ISS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
RPL9
L9, NPC-A-16, OK/SW-cl.103
ribosomal protein L9
GO Process (13)
GO Function (2)
GO Component (8)
Gene Ontology Biological Process
- RNA metabolic process [TAS]
- SRP-dependent cotranslational protein targeting to membrane [TAS]
- cellular protein metabolic process [TAS]
- gene expression [TAS]
- mRNA metabolic process [TAS]
- nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [TAS]
- translation [NAS, TAS]
- translational elongation [TAS]
- translational initiation [TAS]
- translational termination [TAS]
- viral life cycle [TAS]
- viral process [TAS]
- viral transcription [TAS]
Gene Ontology Molecular Function
Homo sapiens
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
RC3H1 post-transcriptionally regulates A20 mRNA and modulates the activity of the IKK/NF-κB pathway.
The RNA-binding protein RC3H1 (also known as ROQUIN) promotes TNFα mRNA decay via a 3'UTR constitutive decay element (CDE). Here we applied PAR-CLIP to human RC3H1 to identify ∼ 3,800 mRNA targets with >16,000 binding sites. A large number of sites are distinct from the consensus CDE and revealed a structure-sequence motif with U-rich sequences embedded in hairpins. RC3H1 binds ... [more]
Nat Commun Jul. 15, 2015; 6(0);7367 [Pubmed: 26170170]
Throughput
- High Throughput
Curated By
- BioGRID