BAIT
NSMF
HH9, NELF, RP11-48C7.1
NMDA receptor synaptonuclear signaling and neuronal migration factor
GO Process (8)
GO Function (1)
GO Component (15)
Gene Ontology Biological Process
- cellular response to amino acid stimulus [ISS]
- cellular response to electrical stimulus [ISS]
- cellular response to gonadotropin stimulus [ISS]
- positive regulation of neuron migration [IMP]
- positive regulation of protein dephosphorylation [ISS]
- regulation of dendrite morphogenesis [ISS]
- regulation of neuron apoptotic process [ISS]
- regulation of neuronal synaptic plasticity [ISS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
IL1B
IL-1, IL1-BETA, IL1F2
interleukin 1, beta
GO Process (60)
GO Function (3)
GO Component (3)
Gene Ontology Biological Process
- MAPK cascade [IMP]
- activation of MAPK activity [IDA]
- apoptotic process [TAS]
- cell-cell signaling [TAS]
- cellular response to drug [IDA]
- cellular response to mechanical stimulus [IEP]
- cellular response to organic cyclic compound [IDA]
- cellular response to organic substance [IDA]
- cytokine-mediated signaling pathway [IDA]
- embryo implantation [TAS]
- hyaluronan biosynthetic process [IDA]
- inflammatory response [IDA, NAS]
- lipopolysaccharide-mediated signaling pathway [IDA]
- monocyte aggregation [IDA]
- negative regulation of MAP kinase activity [ISS]
- negative regulation of adiponectin secretion [ISS]
- negative regulation of cell proliferation [IDA]
- negative regulation of extrinsic apoptotic signaling pathway in absence of ligand [IDA]
- negative regulation of glucose transport [ISS]
- negative regulation of insulin receptor signaling pathway [ISS]
- negative regulation of lipid catabolic process [IDA]
- negative regulation of lipid metabolic process [ISS]
- positive regulation of I-kappaB kinase/NF-kappaB signaling [IBA]
- positive regulation of JNK cascade [IBA]
- positive regulation of NF-kappaB import into nucleus [IDA]
- positive regulation of NF-kappaB transcription factor activity [IDA]
- positive regulation of T cell mediated immunity [IC]
- positive regulation of T cell proliferation [IDA]
- positive regulation of angiogenesis [ISS]
- positive regulation of calcidiol 1-monooxygenase activity [IDA]
- positive regulation of cell adhesion molecule production [NAS]
- positive regulation of fever generation [ISS]
- positive regulation of gene expression [IDA]
- positive regulation of granulocyte macrophage colony-stimulating factor production [IDA]
- positive regulation of heterotypic cell-cell adhesion [IDA, NAS]
- positive regulation of histone acetylation [NAS]
- positive regulation of histone phosphorylation [NAS]
- positive regulation of interferon-gamma production [IDA]
- positive regulation of interleukin-2 biosynthetic process [IMP]
- positive regulation of interleukin-6 production [TAS]
- positive regulation of interleukin-8 production [IDA]
- positive regulation of lipid catabolic process [ISS]
- positive regulation of membrane protein ectodomain proteolysis [IDA]
- positive regulation of mitosis [IMP]
- positive regulation of monocyte chemotactic protein-1 production [IDA]
- positive regulation of myosin light chain kinase activity [IDA]
- positive regulation of nitric oxide biosynthetic process [IDA]
- positive regulation of prostaglandin secretion [ISS]
- positive regulation of protein export from nucleus [NAS]
- positive regulation of protein phosphorylation [IDA, NAS]
- positive regulation of sequence-specific DNA binding transcription factor activity [IDA]
- positive regulation of transcription, DNA-templated [IDA]
- positive regulation of vascular endothelial growth factor receptor signaling pathway [IC]
- positive regulation vascular endothelial growth factor production [IDA, ISS]
- protein kinase B signaling [IMP]
- regulation of I-kappaB kinase/NF-kappaB signaling [IDA]
- regulation of insulin secretion [IDA]
- sequestering of triglyceride [IDA]
- signal transduction [TAS]
- smooth muscle adaptation [NAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Affinity Capture-RNA
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and associated RNA species identified by Northern blot, RT-PCR, affinity labeling, sequencing, or microarray analysis.
Publication
IL-1 Transcriptional Responses to Lipopolysaccharides Are Regulated by a Complex of RNA Binding Proteins.
The IL1A and IL1B genes lie in close proximity on chromosome 2 near the gene for their natural inhibitor, IL1RN Despite diverse functions, they are all three inducible through TLR4 signaling but with distinct kinetics. This study analyzed transcriptional induction kinetics, chromosome looping, and enhancer RNA production to understand the distinct regulation of these three genes in human cells. IL1A, ... [more]
J Immunol Dec. 01, 2019; 204(5);1334-1344 [Pubmed: 31953354]
Throughput
- Low Throughput
Additional Notes
- assayed using RIP (RNA immunoprecipitation) in which protein corresponding to bait gene NELF was IPd and associated enhancer-derived RNA corresponding to prey/hit genes IL1A and IL1B was detected by qRT-PCR (quantitative reverse transcription polymerase chain reaction)
Curated By
- BioGRID