BAIT
ACTR3
ARP3
ARP3 actin-related protein 3 homolog (yeast)
GO Process (5)
GO Function (3)
GO Component (6)
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
LIMD1
LIM domains containing 1
GO Process (16)
GO Function (2)
GO Component (6)
Gene Ontology Biological Process
- cell migration [IMP]
- cytoplasmic mRNA processing body assembly [IMP]
- cytoskeleton organization [IMP]
- gene silencing by miRNA [IMP]
- multicellular organismal development [TAS]
- negative regulation of canonical Wnt signaling pathway [ISS]
- negative regulation of hippo signaling [IDA]
- negative regulation of osteoblast differentiation [ISS]
- negative regulation of transcription, DNA-templated [IDA, IMP]
- osteoblast development [ISS]
- phosphorylation [IDA]
- positive regulation of gene silencing by miRNA [IMP]
- regulation of cell shape [IMP]
- regulation of transcription, DNA-templated [TAS]
- response to hypoxia [IDA]
- signal transduction [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Proximity Label-MS
An interaction is inferred when a bait-enzyme fusion protein selectively modifies a vicinal protein with a diffusible reactive product, followed by affinity capture of the modified protein and identification by mass spectrometric methods.
Publication
A proximity-dependent biotinylation map of a human cell.
Compartmentalization is a defining characteristic of eukaryotic cells, and partitions distinct biochemical processes into discrete subcellular locations. Microscopy1 and biochemical fractionation coupled with mass spectrometry2-4 have defined the proteomes of a variety of different organelles, but many intracellular compartments have remained refractory to such approaches. Proximity-dependent biotinylation techniques such as BioID provide an alternative approach to define the composition of ... [more]
Nature Jun. 02, 2021; (); [Pubmed: 34079125]
Quantitative Score
- 11.23 [FoldChange]
Throughput
- High Throughput
Additional Notes
- BioID
- SAINTexpress (v.3.6.1) was used to identify proximity interactions and those with a Bayesian FDR =< 0.01 were considered high confidence. The score represents the fold change of the average spectral count in sample replicates relative to the average in control replicates.
Curated By
- BioGRID