FOXJ1
Gene Ontology Biological Process
- actin cytoskeleton organization [ISS]
- activation of Rho GTPase activity [ISS]
- brain development [ISS, NAS]
- central tolerance induction [ISS]
- cilium assembly [ISS]
- cilium morphogenesis [ISS]
- epithelium development [ISS]
- establishment of apical/basal cell polarity [ISS]
- glomerular parietal epithelial cell development [IEP]
- humoral immune response [ISS]
- leukocyte migration [ISS]
- lung epithelium development [IEP, NAS]
- metanephric part of ureteric bud development [IEP]
- negative regulation of B cell activation [ISS]
- negative regulation of NF-kappaB transcription factor activity [ISS]
- negative regulation of T cell differentiation in thymus [ISS]
- negative regulation of germinal center formation [ISS]
- negative regulation of humoral immune response mediated by circulating immunoglobulin [ISS]
- negative regulation of interleukin-6 biosynthetic process [ISS]
- negative regulation of transcription from RNA polymerase II promoter [ISS]
- pattern specification process [ISS]
- positive regulation of central B cell tolerance induction [ISS]
- positive regulation of lung ciliated cell differentiation [IDA]
- positive regulation of transcription from RNA polymerase II promoter [IDA]
- spermatogenesis [NAS]
- transcription from RNA polymerase II promoter [IBA]
Gene Ontology Molecular Function
RFX1
Gene Ontology Biological Process
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
Dual proteome-scale networks reveal cell-specific remodeling of the human interactome.
Thousands of interactions assemble proteins into modules that impart spatial and functional organization to the cellular proteome. Through affinity-purification mass spectrometry, we have created two proteome-scale, cell-line-specific interaction networks. The first, BioPlex 3.0, results from affinity purification of 10,128 human proteins-half the proteome-in 293T cells and includes 118,162 interactions among 14,586 proteins. The second results from 5,522 immunoprecipitations in HCT116 ... [more]
Quantitative Score
- 0.999999949 [compPASS Score]
Throughput
- High Throughput
Additional Notes
- BioPlex 3.0 HEK 293T cells CompPASS score = 0.999999949, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HEK293T.
- BioPlex HCT HCT116 cells CompPASS score = 0.999999992, threshold = 0.75. Quantitative scores are calculated by CompPASS-Plus (Huttlin et al. Cell 2015, PMID: 26186194). The 0.75 threshold represents the top 2% of scores in HCT116.
- Only scores from within the same cell line in BioPlex HCT (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
- This data may be re-scored from BioPlex 1.0 (PMID: 26186194) and BioPlex 2.0 (PMID: 28514442). Only scores from within the same cell line in BioPlex 3.0 (PMID: 33961781) should be compared directly. For comparison of HEK293T and HCT116 interaction networks with relaxed threshold = 0.1, see BioPlex Interactome (https://bioplex.hms.harvard.edu/index.php).
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| FOXJ1 RFX1 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | 1 | BioGRID | 2218212 | |
| FOXJ1 RFX1 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | - | BioGRID | 1507575 |
Curated By
- BioGRID