BAIT

RPB3

DNA-directed RNA polymerase II core subunit RPB3, B44, L000001677, L000001589, YIL021W
RNA polymerase II third largest subunit B44; part of central core; similar to prokaryotic alpha subunit
GO Process (2)
GO Function (2)
GO Component (2)
Saccharomyces cerevisiae (S288c)
PREY

MED6

L000003569, YHR058C
Subunit of the RNA polymerase II mediator complex; associates with core polymerase subunits to form the RNA polymerase II holoenzyme; essential for transcriptional regulation; protein abundance increases in response to DNA replication stress
Saccharomyces cerevisiae (S288c)

Affinity Capture-MS

An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.

Publication

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions.

Gopalakrishnan R, Winston F

The histone chaperone Spt6 is involved in promoting elongation of RNA polymerase II (RNAPII), maintaining chromatin structure, regulating cotranscriptional histone modifications, and controlling mRNA processing. These diverse functions of Spt6 are partly mediated through its interactions with RNAPII and other factors in the transcription elongation complex. In this study, we used mass spectrometry to characterize the differences in RNAPII-interacting factors ... [more]

J Biol Chem Dec. 01, 2020; 297(4);101205 [Pubmed: 34543624]

Throughput

  • High Throughput

Additional Notes

  • Hit protein is enriched in WT background
  • Hit protein is enriched in spt6-1004 background

Related interactions

InteractionExperimental Evidence CodeDatasetThroughputScoreCurated ByNotes
MED6 RPB3
Affinity Capture-Western
Affinity Capture-Western

An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins.

Low-BioGRID
-
RPB3 MED6
Negative Genetic
Negative Genetic

Mutations/deletions in separate genes, each of which alone causes a minimal phenotype, but when combined in the same cell results in a more severe fitness defect or lethality under a given condition. This term is reserved for high or low throughput studies with scores.

High-0.3316BioGRID
1937373

Curated By

  • BioGRID