Interaction inferred from the presence of two or more protein subunits in a partially purified protein preparation. If co-fractionation is demonstrated between 3 or more proteins, then add them as a complex.

Publication

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.

Havugimana PC, Goel RK, Phanse S, Youssef A, Padhorny D, Kotelnikov S, Kozakov D, Emili A

Co-fractionation/mass spectrometry (CF/MS) enables the mapping of endogenous macromolecular networks on a proteome scale, but current methods are experimentally laborious, resource intensive and afford lesser quantitative accuracy. Here, we present a technically efficient, cost-effective and reproducible multiplex CF/MS (mCF/MS) platform for measuring and comparing, simultaneously, multi-protein assemblies across different experimental samples at a rate that is up to an order ... [more]

Nat Commun Jul. 13, 2022; 13(1);4043 [Pubmed: 35831314]

Throughput

High Throughput

Additional Notes

High confidence interactions were identified as having an EPIC score >=0.625 in applicable cell lines (MCF7, MDA231 or MCF10A)
MCF10A cell line (score 0.697)

Curated By

BioGRID

Interaction Summary

DLD

Gene Ontology Biological Process

Gene Ontology Cellular Component

NME1

Gene Ontology Biological Process

Gene Ontology Molecular Function

ATP binding [IDA]GTP binding [IDA]deoxyribonuclease activity [IDA]identical protein binding [IPI]magnesium ion binding [IDA]nucleoside diphosphate kinase activity [IDA]poly(A) RNA binding [IDA]protein binding [IPI]ribosomal small subunit binding [IPI]