BAIT
DDX6
HLR2, P54, RCK
DEAD (Asp-Glu-Ala-Asp) box helicase 6
GO Process (6)
GO Function (4)
GO Component (7)
Gene Ontology Biological Process
- RNA metabolic process [TAS]
- cytoplasmic mRNA processing body assembly [IDA]
- exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay [TAS]
- gene expression [TAS]
- mRNA metabolic process [TAS]
- nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
PREY
LIMD1
LIM domains containing 1
GO Process (16)
GO Function (2)
GO Component (6)
Gene Ontology Biological Process
- cell migration [IMP]
- cytoplasmic mRNA processing body assembly [IMP]
- cytoskeleton organization [IMP]
- gene silencing by miRNA [IMP]
- multicellular organismal development [TAS]
- negative regulation of canonical Wnt signaling pathway [ISS]
- negative regulation of hippo signaling [IDA]
- negative regulation of osteoblast differentiation [ISS]
- negative regulation of transcription, DNA-templated [IDA, IMP]
- osteoblast development [ISS]
- phosphorylation [IDA]
- positive regulation of gene silencing by miRNA [IMP]
- regulation of cell shape [IMP]
- regulation of transcription, DNA-templated [TAS]
- response to hypoxia [IDA]
- signal transduction [TAS]
Gene Ontology Molecular Function
Gene Ontology Cellular Component
Homo sapiens
Co-fractionation
Interaction inferred from the presence of two or more protein subunits in a partially purified protein preparation. If co-fractionation is demonstrated between 3 or more proteins, then add them as a complex.
Publication
Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery.
Co-fractionation/mass spectrometry (CF/MS) enables the mapping of endogenous macromolecular networks on a proteome scale, but current methods are experimentally laborious, resource intensive and afford lesser quantitative accuracy. Here, we present a technically efficient, cost-effective and reproducible multiplex CF/MS (mCF/MS) platform for measuring and comparing, simultaneously, multi-protein assemblies across different experimental samples at a rate that is up to an order ... [more]
Nat Commun Jul. 13, 2022; 13(1);4043 [Pubmed: 35831314]
Throughput
- High Throughput
Additional Notes
- High confidence interactions were identified as having an EPIC score >=0.625 in applicable cell lines (MCF7, MDA231 or MCF10A)
- MCF10A cell line (score 0.664)
- MCF7 cell line (score 0.662)
Curated By
- BioGRID