TFC1
Gene Ontology Biological Process
Gene Ontology Molecular Function- DNA binding, bending [IDA]
- RNA polymerase III type 1 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
- DNA binding, bending [IDA]
- RNA polymerase III type 1 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
Gene Ontology Cellular Component
TFC6
Gene Ontology Biological Process
Gene Ontology Molecular Function- RNA polymerase III type 1 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
- RNA polymerase III type 1 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 1 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding [IDA]
- RNA polymerase III type 2 promoter sequence-specific DNA binding TFIIIB recruiting transcription factor activity [IDA]
Gene Ontology Cellular Component
Affinity Capture-MS
An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods.
Publication
The social and structural architecture of the yeast protein interactome.
Cellular functions are mediated by protein-protein interactions, and mapping the interactome provides fundamental insights into biological systems. Affinity purification coupled to mass spectrometry is an ideal tool for such mapping, but it has been difficult to identify low copy number complexes, membrane complexes and complexes that are disrupted by protein tagging. As a result, our current knowledge of the interactome ... [more]
Quantitative Score
- 10.0 [Score_FDR+correlation]
Throughput
- High Throughput
Additional Notes
- Protein interactions were identified using statistically significant enrichment of the proteins in the forward and reverse pull-downs, as well as making use of the profile similarities of interacting proteins in a correlation analysis. High confidence interactions have a total score >=2. This score is a sum of the FDR score of the forward pull-down + FDR score of the reverse pull-down + correlation score.
Related interactions
| Interaction | Experimental Evidence Code | Dataset | Throughput | Score | Curated By | Notes |
|---|---|---|---|---|---|---|
| TFC6 TFC1 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | - | BioGRID | 2556273 | |
| TFC1 TFC6 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | - | BioGRID | - | |
| TFC1 TFC6 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | - | BioGRID | - | |
| TFC1 TFC6 | Affinity Capture-MS Affinity Capture-MS An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner is identified by mass spectrometric methods. | High | - | BioGRID | - | |
| TFC1 TFC6 | Affinity Capture-Western Affinity Capture-Western An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins. | Low | - | BioGRID | - | |
| TFC1 TFC6 | Affinity Capture-Western Affinity Capture-Western An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins. | Low | - | BioGRID | - | |
| TFC1 TFC6 | Affinity Capture-Western Affinity Capture-Western An interaction is inferred when a bait protein is affinity captured from cell extracts by either polyclonal antibody or epitope tag and the associated interaction partner identified by Western blot with a specific polyclonal antibody or second epitope tag. This category is also used if an interacting protein is visualized directly by dye stain or radioactivity. Note that this differs from any co-purification experiment involving affinity capture in that the co-purification experiment involves at least one extra purification step to get rid of potential contaminating proteins. | Low | - | BioGRID | - | |
| TFC1 TFC6 | Co-fractionation Co-fractionation Interaction inferred from the presence of two or more protein subunits in a partially purified protein preparation. If co-fractionation is demonstrated between 3 or more proteins, then add them as a complex. | Low | - | BioGRID | - | |
| TFC6 TFC1 | Negative Genetic Negative Genetic Mutations/deletions in separate genes, each of which alone causes a minimal phenotype, but when combined in the same cell results in a more severe fitness defect or lethality under a given condition. This term is reserved for high or low throughput studies with scores. | High | -0.5669 | BioGRID | 1927454 | |
| TFC1 TFC6 | Negative Genetic Negative Genetic Mutations/deletions in separate genes, each of which alone causes a minimal phenotype, but when combined in the same cell results in a more severe fitness defect or lethality under a given condition. This term is reserved for high or low throughput studies with scores. | High | -0.7905 | BioGRID | 1920974 |
Curated By
- BioGRID